Phenylobacterium zucineum: PHZ_c1788
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Entry
PHZ_c1788 CDS
T00750
Name
(GenBank) metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHZ_c1788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzu03019
]
PHZ_c1788
Messenger RNA biogenesis [BR:
pzu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PHZ_c1788
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ACG78199
UniProt:
B4RC02
LinkDB
All DBs
Position
complement(2001394..2003076)
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AA seq
560 aa
AA seq
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MARNKDTDELVFLPLGGSNEIGMNFNLYGFGPAHDRKWIVVDLGVTFGDQTTPGVEVILP
DPEFIEEYADRILGIVLTHAHEDHIGAVAWLWPRLKAPIYATPFTAFVLREKLREADLLE
AAQITEVPLGGTIELGPFKLELITLTHSIPEPNGLAIRTPLGTILHTGDWKIDPDPLLGG
PTDEDAIRRLGDEGVLAMVCDSTNVFVDGHAGSEAEVRAALIPLIGGLKGKVAVACFASN
VARMDSVARAAQAAGRRVCLVGRSMIRMASAAKSVGLMQDLPPFVTEAEANHHPANEILY
LCTGSQGEPRAALARIADGTHPHVSLGEGDHCIFSSRVIPGNEIPIRNLQNNLADRGVRL
YTERDHPGIHVSGHPCRDELAEMYRWARPQVAVPTHGERRHLLEHAAFARDLQVPQQVTP
RNGDMVRLAPGRAEIVDEVPSGRIYVDAGVLTPENGPSLRERRHASYNGVVAVSVVLDGR
GRIASGPQVRALGLPTDEDYPLDEVLEDLADEAKEALGRLKGEQRELDDEIETAMSRAVK
KASQRIWGRRPVVETTVLRI
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaacaaggacaccgacgaactcgtcttcctgccgctgggcgggtcgaacgag
atcggcatgaacttcaacctctacggcttcggcccggcgcacgaccgcaagtggatcgtg
gtggacctgggcgtgaccttcggcgaccagaccacgccgggcgtcgaggtgatcctgccc
gaccccgagttcatcgaggaatacgccgaccgcatcctggggatcgtgctgacccacgcc
cacgaggaccacatcggggcggtcgcctggctgtggccgcgcctgaaggcgccgatctac
gccacgccgttcaccgccttcgtcctgcgcgagaagctgcgcgaggccgacctgctggag
gcggcgcagatcaccgaggttccgctgggcgggacgatcgagctcggccccttcaagctg
gagctcatcacgctcacccactcgatcccggagccgaacggcctggcgatccgcacgccg
ctgggcaccatcctgcacaccggggactggaagatcgaccccgacccgctgctgggcggg
ccgaccgacgaggacgccatccgccggctgggcgacgagggcgtgctggccatggtctgc
gattcgaccaacgtcttcgtcgacggccacgccggctccgaggccgaggtgcgggccgcg
ctgatcccgctgatcggcgggctgaaaggcaaggtggcggtcgcctgcttcgcctccaac
gtggcgcggatggacagcgtcgcgcgcgcggcgcaggcggccggccggcgggtctgtctt
gtcggtcgctcgatgatccgcatggcctccgcggccaagtcggtcgggctgatgcaggac
ctgccgccgttcgtcaccgaggccgaggccaaccaccatccggcgaacgagatcctctat
ctctgcaccggcagccagggcgagccgcgcgcggccctggcccgcatcgccgacgggacg
catccgcacgtgagcctcggggaaggcgaccactgcatcttctcctcgcgggtgatccct
gggaacgagatcccgatccgcaacctgcagaacaacctcgccgaccgcggcgtgcgcctc
tacaccgagcgcgaccacccgggcatccacgtctcgggccacccgtgccgggacgagctg
gccgagatgtaccgctgggcgcggccgcaggtcgccgtgccgacccacggcgagcgccgc
cacctgctcgagcacgccgccttcgcccgcgacctgcaggtgccccagcaggtcacccct
cggaacggcgacatggtccgcctcgcgcccggccgggccgagatcgtcgacgaggtgccg
tcgggccgcatctatgtggacgccggcgtgctgacgcccgagaacggcccgtcgctgcgc
gagcggcggcacgcctcgtacaatggcgtcgtcgcggtctcagtcgtgctggacgggcgc
ggccgcatcgcctcgggtccgcaggtgagggcgctggggttgcccaccgacgaggactat
ccgctcgacgaggtgctggaagacctggccgacgaggccaaggaggcccttggccggctg
aagggcgagcagcgcgagctggacgacgagatcgagaccgccatgtcccgcgcggtgaag
aaggccagccagcgcatctggggccgccggcccgtggtcgagacgacggtgctgaggatc
tga
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