Phenylobacterium zucineum: PHZ_c1842
Help
Entry
PHZ_c1842 CDS
T00750
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHZ_c1842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzu03019
]
PHZ_c1842
03009 Ribosome biogenesis [BR:
pzu03009
]
PHZ_c1842
Enzymes [BR:
pzu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PHZ_c1842
Messenger RNA biogenesis [BR:
pzu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PHZ_c1842
Ribosome biogenesis [BR:
pzu03009
]
Prokaryotic type
rRNA processing factors
PHZ_c1842
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
CDC45
S1
Motif
Other DBs
NCBI-ProteinID:
ACG78253
UniProt:
B4RCR6
LinkDB
All DBs
Position
2064179..2066869
Genome browser
AA seq
896 aa
AA seq
DB search
MSKTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREALLREEAEEDDDDRHEPRARAPEDEDEVDLSGS
ADDEDDVVEEELARRRRRLMRRYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGR
YGVLMPNTARGGGISRKITTATDRKRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDY
DYLLRLWENIRETTLHSIAPALIYEEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFM
RMLMPSQAKKVQLYREPTPLYVKHKVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVN
SGRATRERNIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKD
CLKDDRARVQMGKISPFGLMEISRQRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALR
ALEIEALKGGGEATLTVPRAVGLYILNEKRGHLARLHHAFGLFVTVLIDDDMAHAEHGIE
RTASETRAEHAAALAPTAAGAVPPAEEAYLEEVFEDEDEAEEEEESFEEDEDEGGAEAEA
PRSREARGDREDGEGRRGRRRRRRGRRGDEPAGERPEGARSEGGRPEGGRREEVQAEDED
GAHGRRRRRGRRGGRRMRDDFRPHEPFSWVRPWVPYGEDPFVWYDPAEDLKPVAAPPAAA
NDAAAEPQPAAAEAAAPAPAVRAPQPEGDMEVWVELPAEEEKPKRARRSRSRGRGKAEAQ
AEEAVAAEVAAPEAVVAPEPEAPAEPEPAAAEPEAAEPEKPAPKRRTRSRKAAAPVEAEA
TAAEPAAEPARPEPAPAAPAEPVAASVPEPEAPQAPDPAEISGPPPAPRKGWWRRG
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaccatgttgatcgacgcagcccacgcggaagagacgcgcgtggtggtcgtc
gacgggaaccgcgttgaagagttcgatttcgaaagccagaaccggaagcagcttcgaggc
aacatctatctcgccaaggtgacgcgcgttgagccgtcgctgcaggcggccttcgtcgaa
tacggcggcaaccgccacggcttcctggccttcaacgaaatccaccccgactactaccag
atcccggtcgccgaccgcgaagcgctgctccgcgaggaggccgaggaggacgacgacgac
cgtcacgagccccgcgcccgggcgcccgaggacgaggacgaggtcgacctgtccggctcc
gctgacgacgaggacgacgtcgtcgaggaagagctggcgcgccgccgccgccggctgatg
cgccgctacaagatccaggaagtgatccgccgccggcagatcatgctggtccaggtcgtc
aaggaagagcgcggcaacaagggcgcggcgctgaccacctacctgtcgctggccggccgc
tatggcgtactgatgccgaacaccgcccgcggcggcggcatcagccgcaagatcaccacg
gcgaccgaccgcaagcgcctgaagagcatcgtccagagcctggacgtgcccgccggcatg
ggcctcatcgtccgcacggcgggcgccaagcgcaccaaggccgagatcaagcgcgactac
gactacctgctgcgcctgtgggagaacatccgcgagacgacgctgcactcgatcgcgccc
gccctcatctacgaggaagaggacctcgtgaagcgggcgatccgcgacctctacgacaag
gacgtggacaacgtctgggtcgagggcgaggccggcttcaaggaagcccgcgacttcatg
cgcatgctgatgccgtcgcaggccaagaaggtgcagctctaccgcgagccgacgccgctc
tacgtcaagcacaaggtcgaggaccacctcagccagatctattcgcccgtcgtgccgctg
cgctccggcggctacctggtgatcaaccagaccgaagcgctggtcgccatcgacgtgaac
tccggccgcgcgacgcgcgaacggaacatcgaggccaccgcgctcaagaccaacatggag
gcggccgaagaagccgcccggcagctgcgcctgcgcgacctggccggcctgatcgtcatc
gacttcatcgacatggatgaggcgaagaacaaccgggccgtcgagaagaagctgaaggac
tgcctgaaggacgaccgcgcgcgggtccagatgggcaagatcagccccttcggcctgatg
gagatctcccgccagcgccgccgcaccggcgtgctggagggcaccacccacgtgtgcgaa
cactgcggcggcaccggccgggtccgctcggtggaatccagcgcgctggccgcgctgcga
gccctggagatcgaggcgctgaagggcggcggcgaagccaccctgaccgtgccgcgcgcc
gtgggcctctacatcctgaacgagaagcgcggtcatctcgcccgcctgcaccacgcgttc
ggcctgttcgtcaccgtcctgatcgacgacgacatggcgcacgccgagcacggcatcgag
cgaaccgccagcgagacccgcgccgagcacgccgcggcgctcgcgccgacggccgccggc
gccgtccccccggccgaggaggcctacctcgaggaggtcttcgaggacgaggacgaggcc
gaggaggaagaggagtccttcgaggaggacgaggatgaaggcggcgccgaagccgaggct
ccccgcagccgcgaggcccggggcgatcgggaagacggcgaaggccgccgcgggcgtcgc
cgccgtcgccgcggccgccggggcgacgagcccgcgggcgagcggcccgagggcgcacgt
tcggagggcggccgtcccgagggcgggcgacgcgaggaggtccaggccgaggacgaggac
ggcgcccacggccgtcgccgtcgccgcggccgccgcggcggtcggcgcatgcgcgacgac
ttccgcccgcacgagcccttctcctgggtgcgcccctgggtgccttacggcgaagatccc
ttcgtctggtacgatccggccgaggacctgaagccggtcgccgcgccgccggctgcggcc
aacgatgctgcggccgagccgcagcccgcggccgccgaggccgccgcgcccgcgccggcc
gtccgggccccgcagcccgagggcgacatggaggtctgggtcgagctccccgccgaggag
gagaagcccaagcgcgcccgccgctcgcgcagccgcggccgcggcaaggccgaggcgcaa
gccgaggaggccgtggccgctgaggtcgccgcccccgaggccgtcgtcgcgccggaaccg
gaggctcccgccgagccggagcccgctgcggcggagccggaagcggccgagcctgagaag
cccgcgcccaagcgccggacgcgcagccgcaaggccgccgcgcccgtcgaagccgaggcg
acggccgccgaacccgcagcggagccggcccggcctgaaccggcgcccgcggctccggcc
gagcccgtggcggcttcggttcccgagcccgaggcgccgcaagcgcccgacccggccgag
atctccgggccgccgccggcgccgcgcaaaggctggtggcgccgcggctga
DBGET
integrated database retrieval system
