Qipengyuania aurantiaca: K3148_06240
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Entry
K3148_06240 CDS
T09825
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
qar
Qipengyuania aurantiaca
Pathway
qar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
qar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K3148_06240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qar03400
]
K3148_06240 (ligD)
Enzymes [BR:
qar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K3148_06240 (ligD)
DNA repair and recombination proteins [BR:
qar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K3148_06240 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QZD90980
LinkDB
All DBs
Position
1270364..1272904
Genome browser
AA seq
846 aa
AA seq
DB search
MARSKKATGAPADPLATYNAKRNFAKTPEPSGGPQSSESGDLFIVQKHDATRLHWDLRLE
VDGVLKSWAVTKGPSHDPDIKRLAVRTEDHPMSYAEFEGTIPRGEYGGGTVMLWDRGSWA
PIEGKSASNLDEGHLHFTLQGERMKGEWLLIRLKTRPGEKRENWLLRKLQDSHVEQGDAL
VERELTSVLTGRSIAEIAAGKGGEFPLAGKKDDVFLAQMNKAAAHNASKTKPRKRHKAVP
LPKFRKPQLATLVDEVPAGNGWMHEIKFDGYRTMVAAKGEEVRVYTRSGKDWTDKFAALV
EAIAALNLPACLIDGEIVAYDSKGNPDFSTLQAVLKRGHGSQSKADKLAFHAFDLVELDG
EDLAPLSNIERKERLEALLATAEPPVHVAEHVIGWGEKLYDAMCRAGQEGIIAKKLDAKY
RHARSKAWVKVKCTRRQEFVIVGWKKSAAKGRPFASLLLAQNEGGKLVYKGNVGTGFTTD
EMDDLAAKMRRLGRKTPPVETDLASAKGVTWLTPKLVAEIAFAEFTADGNVRHGSYLGLR
SDKPAKAVRPEKPASGSKSKSQVKISSPERVIFPDSGQKKGELADYYRTVAGIMLPFAGR
RPVSLVRCPQGRAKKCFFQKHDSGSFGDAVHHVPIREKDGGTEDYLYVEDARGILQCVQM
GTIEFHGWASRSDDVEAPDRVIFDLDPDEGLDFKDVKQAARDIRARLSDIGLVSFAMLSG
GKGVHVVVPLSRGHGWEAHKDFARRFAEALSLAEPERFTATMSKAKRKGRIFIDWLRNQR
GSTAVLPYSARARSGAPVAAPIGWNELKEMQDAKPFTIDDVAALIDRAASKELSGWGFAE
QRLPNV
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgctcgaaaaaggccaccggtgcgccggcggacccgctcgcgacttacaacgct
aagcgcaatttcgcaaagacgcccgagccctcgggcgggccccagagcagcgaaagcggt
gaccttttcatcgtgcagaaacacgatgcgacgcggttgcattgggacctgcggctggaa
gtggacggcgtgctcaagagctgggcggtgacaaagggcccctctcacgaccccgatatc
aagcggctagcagtgcggaccgaagaccacccgatgtcctacgccgagttcgaggggacc
atccctaggggcgaatacggcggcggcacggtcatgctatgggaccgcggcagctgggcc
ccaatcgaaggcaagagcgccagcaatctcgacgaggggcacctgcattttacgcttcag
ggtgagcggatgaagggcgaatggctactcatccggctgaagacgagacccggcgaaaag
cgcgagaactggctgctacgcaagctgcaggacagtcatgtcgaacagggtgatgcgctg
gtggagcgcgagctaactagcgtgctcaccggtcgctcgatagcggaaatcgcggctggt
aagggcggcgagttccccctggcgggcaagaaggacgatgtcttccttgcgcagatgaat
aaggccgccgcgcacaatgcttcgaagacgaaaccgcgaaagagacacaaggccgtgccc
ttgccaaaatttcgcaagccgcagctcgccacgctcgtcgacgaagtgcctgccggcaac
ggatggatgcacgagatcaagttcgatggataccgcaccatggtggctgcgaagggcgag
gaggtgcgcgtctatacccgcagcggcaaggactggaccgacaagttcgccgcgctggtc
gaagcgattgccgcgctcaacctgccagcttgcctgatcgacggcgaaatcgtcgcttac
gacagcaagggcaatcccgatttctcgaccctgcaggcggtgctcaagcgcggccatggt
agccagtcgaaggcggacaagctggccttccacgctttcgatctggtcgaactggatggc
gaagacctcgcgccgctaagcaatatagagcgcaaggagcggctcgaggcgctgctcgcc
accgccgagccgcctgtccatgtggccgagcacgtgatcgggtggggggagaagctctat
gatgcgatgtgccgggcggggcaggaaggcataatcgctaagaagctcgacgcgaaatac
cgccacgcgcgcagcaaggcctgggtcaaggtgaagtgcaccagacggcaggagttcgtc
atcgtcggctggaaaaaatccgccgcgaagggccgccccttcgcctcgttgctgctggcg
cagaacgaaggcggcaagctggtatacaagggcaatgtcggcaccggcttcaccacggac
gagatggacgacctcgcggcgaaaatgcggcggctagggcgcaagaccccgccggtggag
accgacttggccagtgcgaagggtgtcacctggctgaccccgaagctggtggcggagatt
gcctttgccgagttcaccgctgacggcaacgttcgccacggcagttatcttggcctccga
tcggataagccggcgaaagcggtgagaccggaaaagcccgccagtggttccaaatccaaa
tctcaagtgaaaatctccagccccgagcgggtcatctttccggacagcggacagaagaaa
ggcgaactcgccgattactaccggaccgtcgccggcatcatgttgccctttgccggccgt
cgcccggtcagcctagtgcgctgtccgcaggggcgggcgaagaagtgcttttttcagaag
cacgatagcggcagtttcggtgacgcggtgcaccatgtcccgatccgcgagaaggacggc
gggactgaggattacctctacgtggaggatgcgcggggcatcctgcaatgcgtccagatg
gggacgatcgaattccacggctgggcctcgcgcagcgacgatgtcgaggcgcccgatcgc
gtgattttcgacctcgaccccgacgaaggtctcgattttaaggacgtcaagcaagccgct
cgcgacatccgcgcgcgattgagcgacatcggtctcgtgagtttcgccatgctgtctggc
gggaagggcgtccacgtggtggtgccgctttcacgcggtcacggttgggaagcacacaag
gacttcgcccgccgctttgccgaggcgctcagcctggccgagccggagcgcttcaccgcc
acgatgagcaaggccaagcgcaagggaagaattttcatcgactggctgcgcaaccagcgt
ggcagcaccgccgtcctgccctattccgcgcgcgcccgtagcggtgccccggtggcggca
ccgattggatggaacgagctcaaagagatgcaggatgctaagccattcaccattgacgat
gttgccgcgctgattgatcgggccgcgagcaaagagctatcgggatggggcttcgccgag
caaagacttccaaacgtttag
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