Qipengyuania aurantiaca: K3148_12285
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Entry
K3148_12285 CDS
T09825
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
qar
Qipengyuania aurantiaca
Pathway
qar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3148_12285 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qar03019
]
K3148_12285 (rnr)
03016 Transfer RNA biogenesis [BR:
qar03016
]
K3148_12285 (rnr)
Enzymes [BR:
qar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K3148_12285 (rnr)
Messenger RNA biogenesis [BR:
qar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3148_12285 (rnr)
Transfer RNA biogenesis [BR:
qar03016
]
Prokaryotic type
tRNA degradation factors
K3148_12285 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
PF0610-like_N
FaeA
WHD_TBPIP
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
QZD89570
UniProt:
A0ABX8ZKP0
LinkDB
All DBs
Position
2521626..2523932
Genome browser
AA seq
768 aa
AA seq
DB search
MGVMKKQNRTGRPQGLPSKEQIIEFIQSSDKPAGKREIAKAFGIKGQEKIALKKRLKDMA
EEGLIDGKKTAFHKMGGLPKVTVLKVVEIDDGEPIAIPESWDPDAPNKPPRLVVKESKKL
AALKRGDRFLGRTEERGKGWIAHPMKKLPARTEGLMGVVEMDGSGKPWLAPVDKRVRNSS
PIGDLGEAKEGELVLAEPMGKSPRAKVKVVEVIGDPLAPKSFSLIAIAKHGIPHIFPPEA
LEEAQTVADLPLSEERREDLRDVPIVAIDPADARDHDDAIWAEPDGDGGYKAIVAIADVS
FYVRPGGKLDREARKRGNSVYFPDRVVPMLPEILSADVCSLVENEDRAAMACHIRISPEG
KVTKWRFTRAIVRLAANIAYEDAQKAIDDGSADETLKNLWGAWKLLFKARQARDPLDLEL
PERQVRLNDEGQIEEIAVRERLDAHRVVEDFMIAANVAAAKALEEKAAPVVYRVHETPSR
EKLVAFKEYLASQGKSFAMGQVITPGLFNRMLKDIVDPAEKALIMEAVLRSQTQAYYGPA
NAGHFGLALGSYAHFTSPIRRYADLLVHRALVDAYKLEQPKPKGAIPDASGLSDRDRTAL
GQITDAISQTERRAMEAERDTIDRYVAAWLSGRVGEVFDTRITGVQGFGFFATIENLGGD
GLVPISTLGREYFRYDEGARELVGEDTGKTYAVGDRLKLRLAESNALTGALKFELPESEG
GAPIEKRGERLQHKKKPLKKGKGAPRQKHAQGPRGRPGNIRHQGRKKK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcatgaaaaaacagaacaggaccgggcggccgcaggggctgcccagcaaagaa
cagataatcgaattcatccagagctccgacaagccggccggcaagcgtgaaatcgccaag
gccttcggcatcaaggggcaggaaaagatcgcgctgaagaagcgcctcaaggacatggcc
gaagaaggcctgatcgacggcaagaagacagccttccacaagatgggcggcctgccgaag
gtgaccgtgctcaaggtcgtcgagatcgacgatggcgagcctatcgcgattcccgaaagc
tgggaccccgatgccccgaacaagccgccccgcctggtggtcaaggaaagcaagaagctc
gcggcgctgaagcgtggcgaccggttcctcggccgtacggaagagcgcgggaagggctgg
atcgcccacccgatgaaaaagctgcctgcgcgcaccgaagggctgatgggcgtcgtcgag
atggacggcagcggcaagccctggctggccccggtggacaagcgcgtgcgcaactcctcg
cccatcggcgacctcggcgaagcgaaggaaggcgagctggtgctggccgaacccatgggc
aagtcgccccgcgcgaaggtcaaggtggtcgaggtgatcggcgacccgctggcgcccaag
agcttcagcctcatcgccatcgccaagcacggcatcccgcacatcttcccgcccgaagcg
ctggaagaggcgcagaccgtcgccgatctcccgctcagcgaagagaggcgcgaagacctg
cgcgatgtgcctatcgtcgccatcgatcccgccgatgcgcgcgatcacgacgacgcgatt
tgggccgagcctgacggggacgggggctacaaggcaatcgtcgcgatcgccgacgtgtcc
ttctacgtccgccccggcggcaagctcgaccgagaggcgcgaaagcgcggcaattcagtc
tatttccccgaccgcgtcgtgccgatgctgccggaaatcctctccgccgatgtctgctcg
ctggtcgagaacgaagaccgtgcggctatggcctgccacatccgcatctcgcctgaaggc
aaggtgacgaagtggcgcttcacccgcgccatcgtgcggctcgcggccaacatcgcctat
gaagacgcgcagaaagccatcgatgatggcagcgcggacgagacgctcaaaaacctctgg
ggcgcttggaagctgctgttcaaggcacgccaggcgcgcgacccgctcgaccttgaattg
cccgagcggcaggtgcgcctcaacgacgagggccagatcgaggaaattgccgttcgcgaa
cgcctcgatgcgcaccgcgtagtggaagacttcatgattgccgccaatgtcgcggcggcc
aaggcgctggaggaaaaggccgcgccggtcgtctaccgcgttcacgagacgccgagccgc
gaaaagctggtggcgttcaaggaatatctcgccagccagggcaagagcttcgccatgggg
caggttatcacgcctggcctgttcaaccgtatgctcaaggacatcgtcgatccggcggaa
aaggcgctgatcatggaggcggtgctgcgcagccagacgcaggcctattacgggccggcg
aatgcggggcacttcggcctcgcgctgggcagctatgcgcatttcacctcgccgatccgt
cgctatgccgacctgcttgtgcaccgcgcgctggtcgacgcttacaagctcgaacagccc
aaacccaagggtgccattcccgacgcatccggcctctccgaccgcgaccggacagcgctg
ggccagattaccgacgccatcagccagaccgagcgccgcgcgatggaggccgagcgcgat
accatcgatcgttatgtggccgcatggctttcgggccgcgtgggcgaggtcttcgacacg
cggatcaccggggttcagggcttcggcttcttcgccactatcgaaaacctcggcggtgac
gggctggtcccgatttccacgctcggccgcgaatacttccgctatgatgaaggcgcgcgc
gagctcgtgggtgaggataccggcaagacctacgccgttggcgaccgtttgaagctgagg
cttgccgaatccaacgcgctcaccggggcgctcaagttcgaattgcccgaaagcgaagga
ggcgcgccgatcgagaaacgcggcgagcgcctccagcacaagaagaagccgctgaagaaa
ggcaagggcgcaccccgccaaaagcacgcgcagggtccgcgcgggcgtccggggaacatc
cgccaccaagggcgaaaaaagaagtag
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