Qipengyuania citrea: NCF85_06765
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Entry
NCF85_06765 CDS
T08274
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
qci
Qipengyuania citrea
Pathway
qci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCF85_06765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qci03019
]
NCF85_06765
03009 Ribosome biogenesis [BR:
qci03009
]
NCF85_06765
Enzymes [BR:
qci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCF85_06765
Messenger RNA biogenesis [BR:
qci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCF85_06765
Ribosome biogenesis [BR:
qci03009
]
Prokaryotic type
rRNA processing factors
NCF85_06765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
USA62667
LinkDB
All DBs
Position
1406256..1408949
Genome browser
AA seq
897 aa
AA seq
DB search
MATRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAAEAEAAEEEQRLRDEEEQRGEMPGDEYDA
DDESSEALAEDLAEDGLEEVDTSDKDDVATIEEGHMENGDDDDDDSSDEDSDEDGRSRGR
DRNRRGRGRRQGKGGRSRAKEVDEARAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNK
GAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQVVSDLSLPKSMGLIVRTA
GLSRTKTEIKRDFDYLARLWDEIRERTLSSSAPALIHSDSDLIKRAIRDIYNRDIEEVVV
EGEPGYKSAKEFMKLLMPSHARRVKQYSDPVPLFQRYGAEDELKAMYDPVVQLKSGGYLV
INPTEALVSIDINSGRSTKEHNIEQTALHTNLEAAREIARQLRLRDMAGLVVIDFIDQEH
HSNTRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRDCPHCDGTGL
VRTASSAGLSALRLIEDEAAKGKGSIIRLAASTEAAIYLLNEKRADLMEIEQRYGVTVEV
VPEGEEEGAKMTVSSHGPKPKDAPRFEPIVQEDDDDEEDLPEQDEETDEDENDDDRPRKK
RRRRRGGRGRNKNRQRDDEDGDDDDDGDEASDETRDESDDEDGDDKPKKRRRRSGRRRGG
RGRGKKSDDMTSEDTDELGEVSEAVVEDMAVVAGPEDSPETAEAAADTEAEEKPKPKKRA
PRKKKVEPEAAAEPEEAEKPKPKKRAPRKKKADAEAPAVEATPEQSEASIEEEKPKRTRR
KAPAKKTAAKVEAESASEASQAQPEADLPAAPDAAPEQPKEAPAPKRGWWQRTFGDD
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctaatcgatgcgcgccaccaggaagaaacccgggtggcggtgctc
aaaggcaaccggattgaggaattcgatttcgaatctgccgatcacaagcagatcaaagga
aacatctatctagctaaagtaacccgggtcgaaccgtcgcttcaggccgcgttcgtagat
tttggcggcaaccgtcacggtttcctggctttcagcgaaatccatcccgattattaccag
atacccaaggaagaccgcgaagccctgctcgctgcggaagccgaagctgcagaagaagag
cagcgactgcgcgatgaggaagagcaacgcggcgaaatgccgggcgacgagtacgacgcg
gatgatgaaagctccgaagcgctcgccgaagaccttgccgaagatggcctcgaagaagtc
gatacgtccgacaaggacgatgtcgctacgatcgaagaaggccacatggaaaatggcgac
gatgacgatgacgattcgtccgatgaggattccgacgaagacggtcgatcgcgaggtcgc
gaccgcaaccgccgcggccgtggacgccgtcagggcaaaggtggccggagccgtgccaag
gaagtcgacgaagcccgcgccaagcgcatggcgctgcgccgtcgctacaaaatccaggac
gtcatccagcggcgccaagttctgctcgtccaggtcgtcaaggaagaacgcggcaacaag
ggtgctgctttaacgacatatctcagcctggctgggcgttacacggtgctcatgccgaac
agcagtcatggtggcggtatttcccgcaagatctcgtcggcatctgaccgcaagcggctc
aagcaggtcgtctccgatctgagcttgcccaaatcgatgggccttatcgtccggacggct
gggctcagccgcaccaaaacggaaatcaagcgcgacttcgattacctcgcccgcctttgg
gatgaaattcgcgaacgtaccttgtcctccagcgcgcctgcgctgatccattcggacagc
gaccttatcaagcgcgcaatccgcgacatctacaatcgcgacatcgaagaagtcgtggtc
gaaggtgaacccggttacaaatcggccaaggaattcatgaagctgttgatgcccagccac
gcacggcgggttaaacagtattctgatccggtgcctttgttccagcgctacggtgcggaa
gacgaactgaaggccatgtacgatccggtcgttcaacttaagtcgggcggatatctcgta
atcaatccgaccgaagcgctggtgtcgatcgacatcaactccggacgctcgaccaaagag
cacaatatcgagcagacggcgcttcacaccaatctcgaggcagcgcgcgaaatcgctcgc
cagctgcgtctgcgcgacatggctggtctggtggtcatcgatttcatcgatcaggagcat
cattcgaacacccgcaaggtcgaaaaggcgatgaaagaagcgctcaagaacgaccgtgcc
cgtattcaggtcggtcgtatctccagcttcggcctgatggaaatgagccgccagcgtcta
cgcaccggcgtgctcgaagcgaccacccgtgattgtccgcattgcgatggtaccggtctc
gtccgcactgcatcttccgcaggtctgtccgcccttcgcctgatcgaagacgaagcggcc
aagggcaagggatcgatcattcgcctcgccgccagcaccgaagcggcgatctatctcctg
aacgaaaagcgcgcagacctcatggagatcgaacagcgttatggcgtaacggtcgaagtc
gtgcccgagggtgaggaagaaggcgcgaagatgaccgtctcgagccacgggccgaagccg
aaagatgcaccgcgcttcgaacctatcgttcaggaagacgacgacgacgaagaagacctg
cccgagcaggatgaggaaaccgacgaggacgagaacgacgatgatcgtccccgcaagaag
cgccgccgccggcgcggtggccgtggccgcaacaagaaccgtcagcgcgacgacgaagac
ggcgatgatgacgacgacggcgacgaagcttcggacgagacgcgcgacgaaagcgatgat
gaagacggcgacgacaagccgaagaagcgccgtcgccgcagtggccgtcgccgtggcgga
cgtggtcgcggaaagaagtcggacgatatgacttcggaagacactgatgaactcggtgaa
gtttccgaagcggtcgtagaagacatggctgttgtcgctggccccgaagactcaccggaa
acggccgaggctgctgccgatacggaagccgaagaaaaaccgaagccgaaaaagcgcgcg
ccccgcaagaagaaggtcgagcccgaagcggcagcggaaccggaagaggccgaaaagccc
aagccgaagaagcgcgcaccgcgcaagaaaaaggccgacgccgaagcacctgctgtcgaa
gctacgcccgagcagtctgaagcgtctatcgaggaagaaaaaccgaagcggacacgccgg
aaggctcccgccaagaagacggctgccaaggtcgaggctgaatctgcgagcgaagcttcg
caagcacagcctgaagccgatctgccggcagcgccggacgcagcccccgaacagccgaaa
gaggcccccgcgccaaagcgcggctggtggcagcggactttcggagacgactag
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