Qipengyuania citrea: NCF85_06950
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Entry
NCF85_06950 CDS
T08274
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
qci
Qipengyuania citrea
Pathway
qci03030
DNA replication
qci03430
Mismatch repair
qci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCF85_06950 (dnaE)
03430 Mismatch repair
NCF85_06950 (dnaE)
03440 Homologous recombination
NCF85_06950 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qci03032
]
NCF85_06950 (dnaE)
03400 DNA repair and recombination proteins [BR:
qci03400
]
NCF85_06950 (dnaE)
Enzymes [BR:
qci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCF85_06950 (dnaE)
DNA replication proteins [BR:
qci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCF85_06950 (dnaE)
DNA repair and recombination proteins [BR:
qci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCF85_06950 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
COE1_HLH
DUF655
HHH_3
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
USA62702
LinkDB
All DBs
Position
complement(1447371..1450847)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSFKPFVPFRILSAYTMLEGAIDPKAMAKLAKERGFPAIAIADRNGLYGAVMFANACKAE
GIQPIIGTLLGVARDSEGKQVDYLPLYAQDEQGYDNLCHLVSRAHLERPLEFEPHVRLND
LDGRSGGLIAFSGASEGALTKLLAEGQQSQAEILLQKLQELFPERLYIELARRGNEVEER
AEAALVELAYGRDLPLVATNPANFAEPHMHKAHDAMLCIAGSTHIDADERTKSNPESYVK
TYHMMDEAFDDLPEAVQNTLVVAQRCAYAPPYRKPILPSLAGDLEGEARMLAEDAHRGLE
ARLEPYGEMSEDQRKIYFDRLKFEVDIINQMGFPGYFLIVADFIKWAKDHDIPVGPGRGS
GAGSLVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQKYGH
DHVAQIITFGKLKARAVLRDTGRILQMSYGHVDRLCKMVPNHPTDPWTLPRALNGAADFK
REYDNDNEVKRLVDLAMQLEGFPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQYD
MKNVESSGLVKFDFLGLKTLSVLKKATDLLKRRDIEIDLSLLPLDDAKVYELMKSGNTVG
VFQLESEGMRRTLTAVKPTNFGDIIALVSLYRPGPMDNIPLFGKRKAGQVEIEYPHAKLE
GILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRERFVDGCKRV
SGIDKGEANALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPEEFYAASMCFDMHQ
SEKLAIFVDDARRSGIKVLPPSLNYSEAEYSVEQTDDGYAVRYALAGIRNVGERAMEAIV
DEREAAGRFKSLKDLFERLPKGSMNSRQLEALISAGALDEFEPNRAKLFANADMLLAVAD
AAERERSSGQGGLFGGEAAPVEDTLRLKEVEDWSLSEARHREKENMGFSFKEHATAVYRE
ISSAQGARSHASLIAGGVPGGGRMTAVMAVQVEGASKGTTKRGKPFIRADFSDSSGQFSA
ACFEEGLVDRFLEWADKQTCVKLDVELDSPSPDEPPRITVRHAVPLDAVRGSMAMLLTLE
VESVDALNQLAIELGEDGAGSDEVMATLLTGDLAPPVMRLGRAFSIDGDLAERLASVPGL
AKVQLTARRGKANLRLVA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaagcccttcgtccctttccgcatcctctccgcctacaccatgctggagggt
gcgatcgacccgaaggcgatggccaaattagccaaggaacgcggctttcccgcgattgca
atcgccgatcgcaacggcctctacggcgcagtcatgttcgcgaacgcctgcaaggcagag
ggcatccagccgatcatcgggacccttcttggtgttgcgcgggatagcgaaggaaagcag
gtcgattacctgccgctctacgcgcaggacgagcagggctacgacaatctctgtcatctc
gtcagccgcgcccatctggaacgtccgctcgagttcgaaccccatgtccgcctgaacgat
cttgatggccgctccggtgggctcatagcattcagcggggcaagcgagggcgcgctgacg
aagcttctggccgagggacaacagagccaggcagagatcctgctgcaaaaacttcaggag
ttgtttcccgaacggctttatatcgagttggctcgccgtggtaacgaggtggaagagcgg
gcagaggcagcactggtcgagttggcctacggccgtgacctccctctcgtcgccacaaac
cctgcaaattttgcagagcctcacatgcataaggcgcatgatgccatgctgtgcattgcc
ggatcgacgcatatcgacgccgacgaacggacgaagtcgaacccggaaagctatgtgaaa
acctatcacatgatggacgaggctttcgacgatctgccggaggctgttcagaacacgctc
gttgtggcgcaacgctgtgcctatgccccgccataccgcaagccgatcctgcccagcctt
gcaggtgacctcgaaggcgaggcgcgcatgttggcggaagatgcccacaggggtctagaa
gcgcgtctcgaaccgtatggcgagatgtccgaagaccaacgaaagatttatttcgatcgc
ctgaaattcgaagtcgatatcatcaatcagatgggctttccgggctacttcctgatcgtt
gccgacttcataaaatgggccaaggaccacgatattcctgtgggcccgggacgtggttcg
ggtgcgggtagcctcgtcgcatgggctttgaccatcacggatctcgatccaatccagctc
ggtctgctgttcgaacgttttctcaaccccgaacgcgtctcgatgcccgatttcgatatc
gatttctgcgaaacgcggcggggcgaggtgatccgttatgtccagcagaaatacggccac
gatcacgtcgctcagatcatcactttcggtaaactgaaggcgcgcgccgttcttcgcgac
accggccgcatcctgcagatgagctatgggcacgtggatcgcctctgcaagatggtgccc
aaccatccgaccgacccctggacgctgcccagggcgctgaacggggccgccgatttcaaa
cgggaatacgacaacgacaatgaggtgaagcgcctcgtcgatctcgccatgcagctcgag
ggttttccgcgtaacagttcgacccacgccgcaggcgtggtgatcggtgatcgaccgctt
gcccaactggtgccgctttatcgcgacccgcggtcggacatgccggtcacgcaatacgac
atgaaaaatgtcgaaagctccggcctcgtcaaattcgactttctcggcctcaagacgctg
tcggttcttaagaaggccaccgatttgctcaaacggcgcgacatcgagatcgatctttcg
cttctgccgctcgatgacgccaaggtctacgagctcatgaagagcggcaatacagtgggg
gttttccagcttgaatcggaaggtatgcgccgtacgctgacggcggtaaagccgaccaat
ttcggcgacatcatcgcgcttgtttcgctatatcgtccgggcccgatggataacattccg
ctgttcggcaagcgcaaggccggtcaggtggaaatcgaatatccgcatgccaagctggaa
ggcattctggccgaaacctacgggatcttcgtttaccaggaacaggttatgcaggccgcg
cagatccttgcaggatactccttgggcgacgccgaccttttgcgccgcgcaatgggtaag
aaggttcaggcagaaatggatgcgcagcgcgaacgcttcgttgatggctgcaagagagta
tccggtatcgacaagggcgaggccaacgcgctgttcgacttgatcgacaagttcgcgggc
tacggtttcaacaagtcccacgccgcagcgtatgcgttgcttgcctatcagacggcttgg
ctgaaggcgcactatcctgaagaattctacgccgcctcgatgtgcttcgacatgcatcaa
tccgaaaagctggcgatcttcgtcgacgatgctcggcgcagcggcatcaaggtgttgccg
ccgtcgctgaactattcggaagcggagtattcggtcgagcaaactgatgacggttatgca
gtgcgttatgcattggctggcatacgcaacgtcggcgagcgagctatggaagcgatcgtc
gacgagcgcgaggctgcagggcgtttcaaaagcctcaaagatttgttcgagcgtctgccc
aagggctccatgaattctcgccagctggaggcgctgatcagtgccggggcgctcgacgaa
ttcgaaccgaaccgcgccaagctgttcgccaatgctgacatgcttttggcagtggccgat
gccgcagagcgcgagcggtcgagcgggcagggtggattgttcggaggagaggccgcgccg
gtcgaggatacattgcgcctcaaggaagtcgaggactggtcgctcagtgaagcgcgtcac
cgtgagaaagagaacatggggttttctttcaaggaacatgccacggcggtctatcgggaa
atttccagcgcgcagggcgcccgctcgcacgcatccctgatcgcagggggcgttcccggt
ggggggcggatgaccgccgtgatggcggtgcaggtcgaaggggccagcaaaggcactacc
aagcgcggcaagccgtttatccgcgcggacttttccgatagctcgggccagttcagcgcc
gcctgcttcgaagaaggtctggtcgacagattcctcgaatgggcggacaagcaaacctgc
gtaaagctcgatgtggagctcgacagtccgagccccgatgagccgccccgcataaccgtt
cggcatgccgtcccgctcgatgccgtccggggaagcatggcgatgttgctgacgctcgag
gtagaaagcgtcgacgcgctgaaccagttggcaatcgaacttggtgaagacggcgcagga
agcgatgaagtgatggccacattgctcaccggcgatctggcgccgcccgtcatgcgcctt
ggacgggcattttctatcgatggggacctcgccgaacgcttggcaagcgtgcccggcctt
gccaaggtgcaactgaccgcgcgacgaggaaaggcaaacttgcgcctcgttgcctga
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