Qipengyuania citrea: NCF85_08940
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Entry
NCF85_08940 CDS
T08274
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
qci
Qipengyuania citrea
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qci03019
]
NCF85_08940 (hrpB)
Enzymes [BR:
qci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCF85_08940 (hrpB)
Messenger RNA biogenesis [BR:
qci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCF85_08940 (hrpB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
WHD_HA2
AAA_30
Flavi_DEAD
Cas3-like_C_2
AAA_19
AAA_22
ResIII
ScmC
RBM43_C
Motif
Other DBs
NCBI-ProteinID:
USA60241
UniProt:
A0ABY4U3A7
LinkDB
All DBs
Position
complement(1872074..1874512)
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AA seq
812 aa
AA seq
DB search
MNNDLPIHAVLPELLGALRQGSGAVLVAPPGAGKTTAVAPALLNEDWCTGTVILTSPRRV
AARAAAERMAETLGEKPGETIGYLTRLDSKRSARTRVLVVTEAIFVNTILSDPELAGISA
VLFDEAHERHLDSDLGLALALESRAVLRDDLRVLVMSATIDGARFAQLLGADTQVIESAG
RAHPLQIRWFGSSPQLAVEDAMAQAVASAWREEQGDILAFLPGVREIERVRERLEARLPS
VLVLPLHGQVDPAGQRAAIRRDAEGRRRIVLATAIAETSLTLDGVSVVVDAGLSRRAEFD
RAAGTTHLVTHRASQAAAAQRAGRAARQGPGIAYRLWEEAGHGGRPPYDPPEMLTADLAP
LILALAQWGSGDPLELGWLDPPPAASIGAARQTLVALGALDADGRITERGSRLAQLPLDP
QGAATILFGAEHGAEMQAARIALLLQERGLGGQGEDLEARLSRWNGDRSARAEASRKLAA
RWAKQARGLAQAPPDGEGGHSPPPSILLAAGRPEFIARRRDASGENWITAGGRGFVLDPA
SPLARGQFLVVGDAQGQAKGARITSAIALEEADLERWLPDRIERRHVLRWTGERVEALLE
RRLGAITLARGPDPAPDGQAIVDMLVEKALENPAKILPAELLARAGHAGVAGLERDGLAE
NAPLWLAPLLQGRRDLDLPRGRLVDALLGQLDWDSRQRLDRLAPREFTSPAGTTHRIDYT
GDDAPSVEVRVQALFGLESQPMVGATPLLLKLTSPAGRPIQSTRDLPNFWRGSWADVRKD
MKGRYPKHRWPEEPWAEKPSLKTKNAFSRSQG
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacgatctgcccattcatgccgtcctgcccgaactgctcggcgcgcttcgtcag
ggcagcggggctgtgctcgtcgcccctccgggcgcgggcaagaccacggcggtcgctccg
gcactgctgaacgaagactggtgcaccggcaccgtcatcctcacctcgccgcggcgcgtg
gcggcacgggccgccgcggaacgcatggcggaaacgctgggcgaaaagccgggggaaacc
atcggctatctcacgcggctcgacagcaaacgctcggccagaacccgcgtattggtggtg
accgaagcgatcttcgtaaacaccattctctccgatcccgaactggcgggaatatccgca
gtcctcttcgacgaagcgcatgagcgtcacctcgacagcgatctgggccttgcgctcgcg
cttgaaagccgcgccgtcctgcgcgacgatctgcgcgtactggtcatgtcggccacgatc
gacggcgcgcggttcgcacagcttctgggggccgatacgcaggtgatcgaaagcgcaggc
agggcgcacccgttgcagatcagatggttcggatcgtcgccgcagctcgcggtggaagat
gccatggcgcaggccgtcgcttcggcctggcgggaagagcagggcgatatcctcgccttc
ctgcccggcgtacgggaaatcgaacgggtgcgcgaacgtctggaagcgcgtctgccttct
gtgcttgtccttccgcttcatgggcaggtcgatcccgcggggcagcgtgctgccatcagg
cgcgatgccgaagggcgccgccgcatcgttcttgccaccgccattgccgaaacctcgctg
acgctcgacggcgtatccgtcgtggtcgatgccggcctgtcccgccgggccgaattcgat
cgcgcggcgggcaccacgcatctggttacccaccgcgccagtcaggccgcggcggcccag
cgcgccggacgcgcggcgcggcaggggccgggtatcgcctatcgcctgtgggaagaggca
ggtcatggcgggcggccgccctacgatccgcccgaaatgctcaccgccgatcttgccccg
ctcatattggcgttggctcaatggggcagcggggacccgctggaactcggctggctcgat
ccgccgcccgcggcttccatcggtgcggcccggcagacactggtggcgctcggcgcgctc
gatgcagatggccggattaccgaacgcggctctcgtctcgcgcagcttccgctcgacccg
cagggggccgcgaccattctcttcggcgcggaacatggggcggaaatgcaagcggcgcgg
atcgccctgctgctgcaggaacgcggtctcggcgggcaaggggaagatctggaagcgcgc
ctctcgcgctggaacggcgatcgcagcgcccgggcagaggccagccgcaagctggcggcc
agatgggcaaagcaggcgcgcggtctggcacaggcgccgcccgatggcgagggtgggcac
agcccgccgcccagcatcctgcttgctgccggacggccggaattcatcgccagacggcgc
gatgccagcggggaaaactggattaccgccgggggcaggggcttcgtgctcgatcccgca
tctccgcttgcccgtgggcaatttctggtcgtgggcgatgcgcaggggcaggcgaaaggc
gcgcggatcacctcggccatcgcgctggaagaagccgatctggaacgctggctgccggac
aggatcgaacgcaggcatgtgctccgctggacgggcgagcgggtggaggcgctgcttgaa
cgcaggcttggcgcgataacgctggcgcgcgggccggacccggcacccgatgggcaggcc
attgtggatatgcttgtggaaaaagctctggaaaacccggcaaagatcctcccggcagaa
ctgctcgcccgcgccggccatgccggtgtcgccgggctggaacgcgacggcctggctgaa
aatgctccgctctggctcgcaccattgctgcaggggcgacgcgatctcgatctacccagg
ggaagactggtcgatgccttgctcggccagctcgactgggacagccgccagcggctggac
cggctggccccgcgcgaatttacctctcctgcgggcaccacgcaccgcatcgactatacg
ggcgacgatgcgccaagcgtggaagtgcgtgtgcaggctctcttcggactggagagccaa
cccatggtcggcgcaacgccgctcctcctgaagctcaccagccccgccgggcggccgatc
cagtccacccgcgacctgccgaatttctggcggggaagctgggccgatgtgcgcaaggac
atgaagggccgttaccccaagcaccgctggccggaggaaccatgggcggaaaagcccagt
ttgaagaccaagaacgccttttcacgctcccaaggttga
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