Qipengyuania citrea: NCF85_15900
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Entry
NCF85_15900 CDS
T08274
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
qci
Qipengyuania citrea
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qci03032
]
NCF85_15900 (gyrB)
03400 DNA repair and recombination proteins [BR:
qci03400
]
NCF85_15900 (gyrB)
Enzymes [BR:
qci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
NCF85_15900 (gyrB)
DNA replication proteins [BR:
qci03032
]
Prokaryotic type
DNA Topoisomerases
NCF85_15900 (gyrB)
DNA repair and recombination proteins [BR:
qci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCF85_15900 (gyrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
USA63209
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Position
plas1:complement(118210..120732)
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AA seq
840 aa
AA seq
DB search
MDDTPEYTGAEAPKKNGYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNA
IDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENT
SDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRDGKEHWMRFEHGDAVESLRVVGDAPKV
EQNPDEEGFKKGTRVTFKASEDTFKNVIEFDFEKLEHRYRELAFLNSGVRILLRDKRHEE
ALEHNLFYEGGIAAFVKYLDRNKQALVAEPISVSAEKDGIGIDVALEWNDSYYENVLCFT
NNIPQRDGGTHLAAFRTALTRTLNNYATASGLMKKEKVSLSGEDMREGLTAIVSVKLPDP
KFGSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPNDAKQIIQKVIDAAAAREAARRARE
MSRKGAMSIASLPGKLADCQDRNPENCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKIL
NVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLT
FFHRQMPEIVKAGHLFIAQPPLYKVSRGKSEVYLKDQPAYDRYLIAQGLDGRVLEAQGGP
VRGGGELQALVDHGLRMRNMLGFVPRKYNSELIEAMALAGALDPAGDRSAALDRAAAHLQ
MGDPDARWKAETGEDGKVRLSRVWRGVTDVHEIDPAFLESAEARKLHKIAQDFADVYASP
LRLVRSSAETEPDDGEANEADDDAPILTDDAITLPTQLLDAVMVAGRKGQKIQRYKGLGE
MNAEQLWETTLDPDNRALLQVKVEDADVTDEIFTRLMGDVVEPRREFIQNNALNVANLDV
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggacgatacccctgaatacacgggcgccgaagcgccgaagaaaaacggttacggcgca
gattcgatcaaggtcctcaaaggcctcgatgcagtgcgcaaacggcctggcatgtacatc
ggcgataccgacgatggctcgggcctccaccacatggtgttcgaagtgtcggacaatgcg
atcgacgaggcgcttgccgggcattgcgacctcgtcctgatcgaactcaacgccgatggc
agcgtgtcggtcgaagataacggtcgcggcattccggtggacatgcacaaggaagaaggc
gtgtccgcggcagaggtcatcatgacccagctgcatgccggcggaaagttcgaaaacacc
agtgacgacaacgcctacaaggtttcgggcgggcttcacggtgtcggcgtgtcggtcgtc
aatgcgctgtccgaatggctcgaactcaccatctggcgcgacggcaaggaacactggatg
cgcttcgaacatggtgacgcggtcgaaagcctgcgtgtcgtgggcgatgctcccaaggtc
gaacagaatcccgacgaagaaggcttcaagaagggcactcgcgtaaccttcaaggcatcg
gaagacaccttcaagaacgtcatcgaattcgatttcgaaaagctggagcaccgctatcgc
gagctcgctttcctcaattcgggcgtacgaattctcctgcgcgacaagcggcacgaagag
gcgctcgaacacaatctgttctacgaaggcggcattgcggcattcgtcaaatatctcgac
cgcaacaagcaggcgctggtcgccgaacccatttcggtaagcgctgagaaagacggtatc
ggcatcgacgtcgcgctggaatggaacgacagctattacgaaaacgtcctgtgcttcaca
aataacattccgcaacgtgacggcgggacccaccttgcggccttccgcaccgcgctaacg
cgcacgctcaacaattacgccaccgccagcgggttgatgaagaaggaaaaggtcagcttg
tccggcgaagacatgcgcgaagggctgaccgcaatcgtatcggtcaagctgccggacccc
aagttcgggtctcagaccaaggacaagctggtgtcttcggaagtccgccagccactcgaa
tcgctcatgggcgaaaagatgaccgagtggctcgaagagaacccgaacgatgccaagcag
atcatccagaaggtcatcgacgcggctgccgcgcgtgaagctgcccgcagggcacgcgag
atgagccgcaagggcgccatgagcatcgcttcgctgcccggcaaactcgccgattgtcag
gaccgcaatcccgaaaactgcgaactctttctggtcgagggcgattcggcaggcgggtcg
gccaagcagggtcgcgaccgtaagactcaggccatccttccgctcaagggcaagatcctc
aatgtggaacgtgcccgcttcgaccggatcatctcgtccaaggaagtcggcacgctgatc
caggcgatgggcaccggcctgcgcgacgaattcaatctcgaaaagctgcgctatcacaag
atcgtgatcatgaccgacgccgacgtcgacggcgcccatatccgcacgctcctgctgacc
tttttccatcgccagatgcccgagatcgtcaaggccgggcacctcttcatcgctcagcct
ccgctctacaaggtgtcgcgaggcaagagcgaagtctatctaaaggatcagccggcatac
gaccgttacctgatcgcacaggggctcgacgggcgggtgctcgaagcgcagggggggccg
gttcgcggtggcggcgaactgcaggcgctggtcgaccacggtctgcgcatgcgcaacatg
ctcggtttcgtaccccgcaaatacaattcggagctgatcgaggcgatggctctggccggc
gcgctcgaccctgccggagatcgttctgctgctctcgatcgtgctgccgcccacctccag
atgggcgatcccgacgctcggtggaaggccgagacgggcgaagacggcaaggtccgcctc
agccgcgtctggcgcggtgtgacggacgtgcacgaaatcgacccggcatttctcgaaagt
gccgaggcacgcaaactgcacaagatcgcgcaggatttcgccgatgtttacgcgtcgccc
ttgcgtctcgtgcgcagcagcgcggaaacagagcccgacgatggcgaagcgaacgaggcg
gatgacgatgcgccgatcctgaccgacgacgcgatcaccctgccgacccagctgctcgac
gcggtgatggtcgccggtcgcaaggggcagaagatccagcgctacaagggtcttggcgag
atgaatgccgagcaattgtgggaaaccaccctcgaccccgacaaccgtgcgctactgcag
gtgaaggtcgaggatgccgacgtaaccgatgaaatcttcacccgcctgatgggcgacgtc
gtcgaaccgcgccgcgaattcatccagaacaatgccctcaacgtggcaaatctggacgtt
tga
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