Qipengyuania citrea: NCF85_15990
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Entry
NCF85_15990 CDS
T08274
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
qci
Qipengyuania citrea
Pathway
qci03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCF85_15990 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qci03400
]
NCF85_15990 (ligD)
Enzymes [BR:
qci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCF85_15990 (ligD)
DNA repair and recombination proteins [BR:
qci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCF85_15990 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Herpes_ICP4_C
Motif
Other DBs
NCBI-ProteinID:
USA62986
LinkDB
All DBs
Position
plas1:138902..141418
Genome browser
AA seq
838 aa
AA seq
DB search
MAARTDPLAEYNARRDFKATPEPAGQRKGGKGGNLFIVQKHDATRLHWDLRLEVDGVLKS
WAVTKGPSPDPDVKRLAVRTEDHPMSYAEFEGVIPKGEYGGGTVMLWDRGQWQPVVGKTA
KDLDKGHLHFTLDGERMKGEWLLIRLKKKPGEKRENWLLRKLQDDYAEDGDALVQRELTS
VLTGRAMAEIAADKNGEYPLAGKKDDAFLAQMEKASAHNARKAKPKRRKSAPIPKYRKPQ
LATLVDDVPAGNGWMHEIKFDGYRALIAAKGKTVRVYTRNGKDWTDKFGALVDTIAALDL
PACLIDGEIVAHNAKGNPDFSSLQKVLKRGKGAQTAADSLALYAFDLLSLDGEDLTGLPN
IERKERLEALLDTAEPPIHVAQHVLGAGEKLYRTMCNAGQEGIISKTVDGSYSGRRSKSW
VKVKCTRRQEFIVVGWKKSSAKGRPFASLLLAQNEGGELVYKGNVGTGFSADDLDDLAAK
LKRIERKTSPVETDKASARGVTWVTPKLVAEIAFAEFTADGNVRHGSFLGLRSDKDAASV
EPEQAKASPAPAAKVEISSRDRVVFPDSGQTKGQLADYYAAVASIMLPFASNRPISLVRC
PQGRAKKCFFQKHDSGSFGEGVHHVAIREKDGGHEDYLYIDDPQGLLQCVQMGTIEFHGW
AARSGDVEAPDRMIFDLDPDEGLGFDEVKQAARDIRDRLADLGLTSFAMLSGGKGVHVVV
PLTTGHDWDQHKDFARRFAEALSLAEPDRFIATMSKAKRKGKIFIDWLRNQRGSTAILPY
SARARSGAPVAIPLAWNELKGMKDAHPYSIDDAKKLLDRAQSKSLHGWGFADQRLPDV
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgcacggatccgctggcggaatataatgccaggcgcgatttcaaggcgacg
cccgaaccggccggccagcggaagggcggaaaagggggcaacctcttcatcgttcaaaag
cacgacgcgacacggcttcactgggatcttcggctcgaagtcgatggagtcctgaaaagc
tgggcagttaccaaggggccatcgccagaccccgatgtcaaacggcttgccgtcaggacc
gaagatcatcccatgtcctatgccgagtttgaaggcgtgatccccaaaggggaatatggc
ggcggaaccgtcatgctgtgggaccggggtcaatggcagcctgtagtgggcaagactgcc
aaggatctcgacaaggggcatcttcacttcaccctcgacggcgagcgtatgaagggcgaa
tggctgttgatccggctgaagaaaaagcccggcgagaagcgcgagaactggttattgcgc
aaattgcaggacgattacgccgaagatggtgacgcgctcgtccagcgcgaactgaccagc
gttctgaccgggcgtgcaatggcggaaattgcggcggacaagaacggcgaatatccactg
gcgggtaagaaggacgatgctttcctggcgcagatggaaaaggcgtctgcgcataatgcg
cgaaaggcaaagccgaagaggcgcaagtcggcgccgataccgaaataccgcaagccacag
cttgcaacgctcgtcgacgatgtcccggccggaaatggctggatgcacgaaatcaagttc
gacggctatcgcgcgttgattgccgcaaagggcaagactgttcgcgtttacacgcgcaac
ggaaaggactggaccgacaagttcggcgccctcgttgacactatcgccgcactcgatttg
ccggcctgccttatcgacggcgaaatcgtcgcccataatgccaagggcaatcccgatttt
tccagcctgcagaaagtgctgaagcgcggcaagggagcgcagaccgcagcggacagtctc
gctctctatgccttcgatctgctttctctggacggtgaagatctgaccggccttcccaac
atagagcgcaaggaacggctcgaagcgctgctcgataccgcggaaccgccgatccatgtc
gcgcagcatgtcctgggggcaggtgaaaagctctaccggaccatgtgcaatgccgggcag
gaaggcatcatttcaaagaccgtcgacggctcctattccgggcgtcgcagcaaatcctgg
gtcaaggtgaaatgcacgcggcggcaggaattcatcgtggtcgggtggaagaagtcttcg
gccaagggccggcccttcgcctcgctgctgctcgctcagaacgagggtggtgaactcgtt
tacaagggaaatgtcggtacgggcttttccgcagacgatctcgatgatctggccgcgaaa
ctgaaacggatcgaacgcaagaccagccccgtcgaaacagacaaggcgagcgcgcgcggc
gttacctgggtcacgcccaagctggtcgccgagatcgcctttgccgaattcactgcggat
gggaatgtccggcacggcagctttcttggcctgcgcagcgacaaggatgctgccagcgta
gaacccgaacaggcgaaagcctctcccgcgcctgccgcgaaggtcgaaatttccagtcgc
gatcgggtcgtctttccggatagcggccagaccaaggggcaattggccgattactatgcg
gcagttgcatcgatcatgctgcccttcgcctccaatcggcccatcagcctcgtgcgatgt
ccgcagggccgcgccaagaaatgcttcttccagaaacacgatagcggcagttttggcgag
ggggtgcatcacgttgccatccgcgaaaaggacggcggccacgaagactatctctacatc
gacgatccccaggggctgctccagtgcgtgcagatggggaccatcgaatttcacggctgg
gccgcacggtcgggcgatgtggaggctccagaccggatgattttcgacctcgatccggac
gagggtctcggtttcgacgaggtcaagcaggccgcacgcgacattcgcgaccggctggcc
gatttggggctgaccagtttcgccatgctctcgggcgggaaaggcgtgcatgtcgtggtt
ccgctgaccaccggccacgactgggaccagcacaaggatttcgcgcgccgctttgccgaa
gcgctaagcctcgcggagcccgatcgcttcatcgccacgatgagcaaggcgaagcgcaag
gggaagatattcatcgactggttgcgcaaccagcgcggatcgacagcgatcctgccctat
tccgcccgcgcccggtccggtgcgccggtggccatcccgctcgcctggaacgagctcaag
gggatgaaggacgcccacccctattccatcgacgatgcgaagaagctgctcgatcgtgcc
cagtcgaaatcgctgcatggctggggctttgccgaccagcgcctgccggatgtctga
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