Qiania dongpingensis: H9Q78_07440
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Entry
H9Q78_07440 CDS
T08121
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
qdo
Qiania dongpingensis
Pathway
qdo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9Q78_07440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qdo03400
]
H9Q78_07440 (mfd)
Enzymes [BR:
qdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9Q78_07440 (mfd)
DNA repair and recombination proteins [BR:
qdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9Q78_07440 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
nSTAND_NTPase5
AAA_22
nSTAND3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QNM04330
UniProt:
A0A7G9G0J8
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All DBs
Position
complement(1585622..1589140)
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AA seq
1172 aa
AA seq
DB search
MAGSFRSPLPELKEYLDTKEDLCRGRGPVSVSGGTDSQKVHQMAELGRMFPLKLVVTYND
ARAKDIYEDYRNFDRNVFLYPARDLLFYNADIQGSLLARKRLMVLKQLLEEGEGTIITTV
DGCMDHLMPLSAFAESVILLEEGQELDLEELRRRLIYMGYDRCAQVEQGGQFCVRGGILD
IFPLTEENPVRVELWGDEIDSIRSFDVESQRSIERLEQVRLYPARELVLDKDRLEEGTER
LIKEKETYRKQLKEQKRIEEAHRIDTIVGEMVEELREGCFLGALEGCVRYFCPETVSFLE
YFKEGIPFFLDEPARIIERANVVEAEFRESMTQRLEKGYLLPGQTDILYSVREVSAALAR
ERSVLFSALEQKTIPVKKRYSMTVKNGNSYHNGFELLVSDLKKWKKEGWRVALLCASRTR
GARLAKDLQEQYDLRAYYSEEEDKEILPGEICVLYGSLHRGFEYPMIKFVVIPESDMFGT
EKKKRRKRTAYEGKKIQSFSELSAGDYVVHENHGLGIYRGIEKIEVDKIIKDYIKIEYAG
NGSLYLPVTQLDMIQKYAGAGAKKPKLNKLGGQEWGRTKSRVKGAVKEIARDLVQLYAAR
QHTDGFQYGPDTVWQKEFEELFPYEATEDQELAIEATKRDMESKKIMDRLICGDVGYGKT
EIAIRAAFKAVQEGKQVVYLVPTTILAQQHYNTFVQRMMDFPVRVDMLSRFRSAAEQKKT
LADLKKGLVDILIGTHRVLSDDVVFKDLGLLIIDEEQRFGVAHKEKIKKMRENVDVLTLT
ATPIPRTLHMSLVGIRDMSVLEEPPMDRVPIQTYVMEYNEEMVREAIERERARGGQVYYV
YNRVQDIEDITSKIAELVPDAVVVYAHGQMRERQLEKIMLDFINGEIDVLVSTTIIETGL
DISNVNTMIIHDADRFGLSQLYQLRGRVGRSNRTAYAFLMYRRNKLLKEEAEKRLAAIRE
FTELGSGIKIAMRDLEIRGAGNLLGAEQHGHMEAIGYDLYCKLLNEAVKALKGEGEEESF
ETAVDFNIDAYIPPSYIKNEVQKLEIYKRISGIEDEEEAMDMRDELTDRFGDLPRSVENL
LEISLLKAMAHKVFVTEITGNRQEVRLVMYEKAPFHVEKIPELVKQYGGTLRFTAAEQPY
FTYMDRKRENRDGKQMLEKVKILLNAIKELLV
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcaggctcttttcgcagtccgctgcctgaactgaaagaatatttagatacaaaagag
gacctttgcagaggcagaggtcctgtttctgtcagtggcggcaccgattctcaaaaggtt
caccagatggcggagctgggacggatgttcccactgaagttagttgtgacttacaacgat
gcaagggcaaaagacatatatgaagattacaggaattttgacaggaatgtttttttatat
ccggccagggatctgctgttttataatgcggatatacagggcagcctgctcgcccggaag
cgcctgatggtactgaagcagcttctggaggaaggagaggggacgatcatcaccacagtg
gacgggtgcatggatcatctgatgcctctgtccgcatttgcggagagtgtaatcttgctg
gaggagggacaggagcttgacctggaggagctccgcaggcgccttatatacatgggatat
gacagatgcgcccaagtggagcagggcggccagttttgtgtccgcggcggtatcctggat
atttttccccttacagaagaaaatccggtccgtgtggaactgtggggagatgagattgac
tccatccgttcctttgatgtggaaagccagcgctccattgaacgtctggagcaggtccgc
ctgtacccggcgagggagctggtccttgacaaagacagactggaagaaggaacagaacgt
ctgataaaggaaaaagaaacatatagaaagcagctgaaggaacagaaacggattgaggag
gctcaccggattgataccatagtgggagaaatggtggaagagcttcgggaggggtgtttt
ttgggagccctggaaggatgtgtccggtacttctgcccggagactgtatccttcctggag
tattttaaagaggggattccgttttttctggatgaaccggccaggatcattgaacgggcc
aatgtggtagaggccgaattccgggagagcatgacgcagaggctggaaaagggctatctg
ctccccggccagacggatatcctttattccgtgagagaagtgtcggcggcactggcgaga
gagcgcagtgttcttttttctgcccttgagcagaagacgataccggtcaagaagcggtac
agcatgacggtcaaaaacgggaattcctaccataacggctttgagcttctggtaagcgat
ttaaagaaatggaaaaaagaaggctggagagtggcgcttttatgcgcttcccgaacgaga
ggagccaggctggcaaaggatctgcaggaacagtatgatctgagggcctattattccgag
gaggaagacaaagagattcttcccggcgagatctgtgtgctgtacgggagccttcacagg
ggatttgagtacccgatgataaaattcgtagtgatcccggaaagcgacatgttcggaacg
gaaaagaagaagcgcagaaaacggactgcctacgagggcaagaagatccagagcttttcg
gaactgtcggccggcgattacgtggtacacgaaaatcatggactcggtatttaccgggga
attgagaaaattgaagtagacaagataataaaggattatataaagattgagtatgccgga
aacggaagcttgtatctgccggtgacccagctggatatgatccagaaatatgctggggcg
ggcgcgaaaaagcccaagctcaataagctgggaggacaggaatggggcaggacgaagtcc
cgggtaaagggggccgtaaaggaaatcgccagggatcttgtgcagctatacgcagcaaga
cagcatacggatggatttcagtacggaccggataccgtttggcagaaggagtttgaagag
ctgtttccttatgaggcgacggaggatcaagagctggccattgaggcgaccaaacgggac
atggagagcaaaaagatcatggaccggctcatatgcggggatgtgggctatggaaagaca
gaaatcgccatccgcgctgcctttaaagcggtccaggagggaaaacaggtcgtatacctg
gtgcctacgaccattttggcgcagcagcattataatacatttgtccagagaatgatggat
ttcccggtccgtgtggatatgctgtcccgcttcaggagcgccgcagagcagaaaaagacc
ttggcggatctgaaaaaggggctggtggatattttgatcggcacccaccgtgtgctttct
gacgacgtggtgttcaaggatctgggacttttgatcattgatgaagaacagcggtttgga
gtagctcacaaggaaaagatcaaaaagatgagagaaaatgtggatgttctgacgctgaca
gccactccgatccccaggacgcttcatatgagcctggtcggcatccgggatatgagtgtc
ctggaagaaccgcccatggacagagtccccattcagacttatgtcatggaatataatgaa
gaaatggtacgggaagccattgagagggaacgggccagaggagggcaggtctattatgtg
tataacagggttcaggatatagaggatatcacatctaagatcgcggaactggttccggac
gccgtagtagtctacgcccatgggcagatgagggagaggcagctggaaaagatcatgctg
gatttcattaatggggagattgatgtgcttgtctctaccacgatcattgaaactggtctg
gatatctccaatgtaaacaccatgatcatccatgacgcggaccggtttgggctgtcccag
ctttaccagcttcgggggagagtcgggcgttccaaccgcaccgcgtacgcattccttatg
tacaggaggaacaagctcctgaaagaagaggcggaaaaacgtctggccgctatccgggag
ttcacggaacttggttccggcatcaagatcgccatgagagacctggagatccgcggggcc
ggaaacctcctcggcgcagagcagcacggccacatggaggccatcggctatgacctttac
tgcaagcttttgaacgaagcagttaaggctttaaaaggagagggagaagaagaatccttt
gagacggctgtcgatttcaacatcgacgcttatattcctccttcttatatcaagaatgag
gtccaaaagcttgagatatacaagcggatttctggaattgaggatgaagaggaagccatg
gatatgcgggatgaactcaccgaccggttcggcgatctgcctcgttccgtggagaatctg
cttgagatttcccttctgaaagccatggctcataaggtgtttgtaacggagataaccgga
aaccgccaggaggtgcggcttgtgatgtatgagaaggcgccgttccatgtggagaagatc
ccggagctggtgaagcagtatggaggaactcttcggttcacggcggcggagcagccatac
ttcacttatatggaccggaaacgggaaaacagggacggaaaacagatgctggaaaaggtg
aaaatcctgttaaatgccataaaagagttgctagtttga
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