Quercus lobata (valley oak): 115950986
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Entry
115950986 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115950986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115950986
03009 Ribosome biogenesis [BR:
qlo03009
]
115950986
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115950986
Spliceosome [BR:
qlo03041
]
Complex A
U1 snRNP components
U1 related factors
115950986
Complex B
115950986
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
Helicases
115950986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Senescence
Motif
Other DBs
NCBI-GeneID:
115950986
NCBI-ProteinID:
XP_030924137
UniProt:
A0A7N2LY68
LinkDB
All DBs
Position
6:complement(13663991..13671134)
Genome browser
AA seq
1175 aa
AA seq
DB search
MATAEPAAASLGPRYAPDDPTLPKPWKGLIDGSTGVLYYWNPETNVTQYEKPASLAPPMP
VGQPTVASTPKLAAIPMAQSMPANGVIAQHGQQITQAPQQQGQHMSQLPQQHSQLMAQQQ
SSMVAQVSHPQGSQMVQGAQQHGSQMGQHLQQQGQPPVSQPHHFMQQMMQYPAQHIPQQQ
PIQHMPQQSTQQVLQQPGQQMPQQAIQQMPQQLGQQTPQHQGSQMAQPQAHQFTHPQLQY
MAYQQSMIPQGQQSSQQQAQHDAQGQQFANQQEYKAAFPNREEVDFQNRNQIGFSPSQFQ
QPGTSSIHNLPAGSNSVQMPQMGVHSGQAQQYGGSLGSMQQPSMGQLQQTRPDLVHQQHG
PRFQNQLGPAMMHSQQSNVPPVGSKVGHEDNLHGRTGNEYYFNANKEGPTGPQDPKLAVI
PMARNPQEMRISGAPFQSPKPGHANAVNAVTGHAMHMHGHAAGGPPFSSNALMRSPFVGS
TDVTGLSPVEVYRQQHEVSATGDNVPAPFMTFEETGFPPEILREIYSAGFSSPTPIQAQT
WPIALQSRDIVAIAKTGSGKTLGYLIPAFMLLRHCRNDPQNGPTVLVLAPTRELATQIQE
EVMKFGRSSGISCTCLYGGASKGLQLKELDRGADIVVATPGRLNDILESKKIDFIQVSLL
VLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSV
DELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARSIGRSFG
AAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVH
RIGRTGRAGATGMSYTFFSEQDWKYAADLIKVLEGANQLVPQEVREIALRGAPGFVKDRG
GISHFDSGSGGGGYGRYDSGGRGGMRDGGFGGRGGRDGNFGGRGGMRAGGFGGRGGMRDG
AVSGHGGRSDFFPGRSNRGRGFGGPSGSNVGWGRNDRGPYDRYNNMDGRGRGRGRGRFDN
RRDVDRKRGRSYSRSPEKVRTWGYSRSSSRSRSRSRSRSRSRSRSWSRGRSYSRSPRRSR
SCSYSRSPRRSRSRSHSRSYDKYERPHERNSNEKDVTMPAFEAAPESGMSPMSPGTRGNA
SPGANLIAQLPVVESTEAGLPEDAVVLSHQSAAAP
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcggagcccgctgctgcttctcttggtccacggtatgcgcctgatgatccc
acccttccgaaaccttggaagggtttgattgatggaagcacgggtgtgttatactactgg
aatcctgaaacgaacgtcacccaatatgaaaagccagcctctttggcaccacctatgccg
gttggccagcctactgttgcttctacgcctaagttggctgcaataccaatggcccagtca
atgccagcaaatggtgtgatagctcagcacgggcagcagataacacaagccccacaacag
caggggcaacacatgagccagttacctcaacagcacagtcaattaatggcacaacagcag
agttcaatggtggcacaggtttctcacccgcagggatctcaaatggtgcaaggggcacag
caacacggttctcaaatgggacaacacttgcaacagcaggggcaacccccagtgtcacaa
ccacatcacttcatgcagcaaatgatgcagtatccagctcagcatatcccgcagcagcag
ccaatccagcacatgcctcagcagtcaactcagcaagtgctgcagcagcctgggcagcaa
atgccacaacaagccattcagcaaatgccccagcagctggggcaacaaacaccacagcat
caaggttcacaaatggcacaaccgcaagcgcatcaatttacacatcctcagctgcaatat
atggcatatcagcaaagcatgattccacaagggcagcaaagttcacagcagcaggcccag
catgatgcacaagggcagcaatttgcaaatcaacaggagtataaggcagcattcccaaat
agggaggaagttgattttcaaaacagaaaccaaattggattttctccatcccagttccag
caacctgggacctcatctattcataacctgcctgctgggagcaattcagttcagatgcct
cagatgggtgttcattcaggtcaagcccaacaatatggtggctctttggggagcatgcag
caaccctctatgggtcaattgcagcaaactaggcctgatttggttcaccagcaacatggt
cctagatttcaaaatcagttgggcccagcaatgatgcatagtcagcagtctaatgtgccc
cctgttggatcaaaggtggggcatgaggataacttacatggtagaactggaaatgaatac
tactttaatgctaacaaggaagggccaactggtccccaagatcccaagcttgcagtaata
cctatggctagaaaccctcaggagatgaggatcagtggtgctccatttcaaagtcccaag
cctggtcatgccaatgcagtgaatgctgtcacaggacatgccatgcatatgcacggccat
gcagcaggtggtcctccattctcaagtaatgctttgatgaggtctccttttgtgggatct
acagatgttactggtctctcacctgttgaagtttaccggcaacagcacgaagtttcagca
acgggggacaatgttccagcaccattcatgacatttgaagagactggattccctccagag
atattgagagagatatattcggctggattctcatctcccacaccaattcaggcgcagaca
tggccgattgccttgcaaagtagggacatagtggcaattgcaaaaacaggttctgggaaa
acattgggctatttgatccctgccttcatgcttcttaggcattgccgtaatgatcctcag
aacggcccaacagtgttggttttggctccaacccgggaacttgctacacagatacaagaa
gaagtcatgaaatttggccgatcatccggaatctcctgcacgtgcttatatggtggtgct
tcaaagggcctacagctaaaagaattagatcgaggggcagatattgttgtggcaactcct
ggtcggctaaacgacatccttgagagtaagaagattgactttatacaagtttcacttctt
gtgcttgatgaggctgatcgaatgcttgacatgggttttgaacctcaaattcgtaagatt
gtgaatgagatacccccacgcagacaaactcttatgtacacagcaacttggcccaaagaa
gtaagaaaaatagctggtgatcttcttgtcaatcctgtccaggttaacattggcagtgtc
gatgagcttgctgcaaacaaggctatcacacagtatgttgaggttgttccacaaatggag
aagcagaggcgcttggagcagatccttagatcccaagaacgaggttcaaagatcattatt
ttctgttccacaaagagattgtgtgatcagcttgcacgtagtattggacgtagttttggg
gctgctgcaattcatggagacaagtctcagggtgagagagactatgttttaaatcagttc
aggagtggaaagtctccaatattagttgcgacggatgttgctgcccgtgggcttgacatc
aaagatataagggtggtaatcaactatgatttccctaccggggttgaggactatgtccac
cgaattggaagaactgggagggctggtgcaactggaatgtcatacacctttttctctgag
caggactggaaatatgcagctgatctgatcaaagttttggagggggctaaccagcttgtg
ccccaagaggtgcgagagattgctttacgtggtgcaccaggttttgtcaaggatcggggt
gggattagccattttgattctggtagtggtggtggtggttatggtcgttatgattctggt
gggcgtggtggcatgagggatggtggctttggtgggcgtggtggcagagatggcaacttt
ggtgggcgtggaggcatgagggctggtggttttggtggacgaggtggcatgagagatggt
gccgttagtgggcatggtgggagaagtgatttttttcctggtcgtagcaacaggggacgt
gggtttggtggtcctagtggtagtaatgttggttggggtaggaatgatcgtggcccatat
gatcggtacaacaatatggatgggcgtggacggggacgtgggcggggaagatttgacaac
agaagagacgttgataggaagagaggcagaagttatagccgtagccctgaaaaagttaga
acatggggttatagcagaagcagcagccgcagccgcagccgcagccgtagtcgaagccga
agtaggagtaggagctggagcaggggtcgtagctacagccgcagccctcgccgcagccgt
agttgtagctacagccgcagccctcgccgtagtcgcagccgtagccacagccgcagctat
gacaaatatgagaggccacatgaaagaaactccaatgagaaagatgttacgatgcctgca
tttgaggctgcgcctgaatcagggatgtctcctatgtccccaggcacacgagggaatgca
tcccctggagccaatctcattgcacagctaccagtggttgagagtaccgaagcagggctt
ccagaggatgctgtagtcttgtcccatcaatcagctgctgcaccttaa
DBGET
integrated database retrieval system
