Quercus lobata (valley oak): 115951028
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Entry
115951028 CDS
T07350
Name
(RefSeq) pre-mRNA-splicing factor SLU7-like isoform X1
KO
K12819
pre-mRNA-processing factor SLU7
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115951028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115951028
Spliceosome [BR:
qlo03041
]
Complex C
Other components
Step II factors
115951028
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slu7
zf-CCHC_4
Tudor_3
Motif
Other DBs
NCBI-GeneID:
115951028
NCBI-ProteinID:
XP_030924204
UniProt:
A0A7N2R6B6
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Position
6:17950121..17955862
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AA seq
534 aa
AA seq
DB search
MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP
SLKHQRKWKSDPNYTKSWYDRGAKIFQADKYRKGACENCGAMTHNVKLCMERPRKKGAKW
TNIHIAPDEKIETFELDYDGKRDRWNGYDAATYARVIERYEARDEARRKYLKEQQLKKLE
EKNNKENGEGNVSDEDEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIRE
DTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQYRVSGQAMEFKQLNIHA
WEAFEKGQDIHMQAAPSQAELLYKNYKIIKEKLKLQMKDAIMEKYGNAATDAKLPRELLM
GQTERQVEYDRAGRVIKGLETSLPKSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIR
NSYCTGAAGIEAAEAAADLMKANIDRKGASEETPVPAEEKRLATWGNDVPDDLLLDKNQL
TEALKKEDERKKEEKDERKRKYNVRWNDEVTAEEMEAYRMKRIHHDDPMKDFLH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcatcagtggctttcaaatctagagaggatcatcggaagcagcttgaattg
gaggaagcgcgtaaagctgggcttgcgccagcagaggttgatgaagatgggaaagagatt
aaccctcacattcctcagtatatgtcgtctgcaccttggtatcttaatgctgagagacca
agtttaaaacatcaaaggaaatggaaatcggatccaaattatacaaaatcctggtatgat
agaggtgcaaaaatatttcaggcagataagtacaggaagggagcatgtgaaaactgtggg
gcaatgacacataatgtgaagttgtgcatggagaggccacgcaagaaaggagcaaaatgg
actaacattcacattgcacctgatgaaaagatagagacttttgaattggattatgatggc
aaacgggaccgatggaatggttatgatgcagcaacttatgctcgcgtcattgagagatat
gaggcaagggatgaggcccgaaggaagtacctgaaagaacagcagctgaagaaattagag
gagaaaaacaataaggagaatggggaaggtaatgtcagtgatgaagatgaagatgctctg
aaagttgatgaggccaaggttgatgaaagtaaacagatggactttgcaaaggttgagaag
cgtgttcgtactacaggtggtggaagcactggaactgtcagaaatttgcgtattcgggag
gacacagcaaaatatcttctgaaccttgatgtcaactctgcgtattatgatcccaaaact
cggtccatgcgtgaagatcctcttcccgatgctgacccgaatgagaagttttatggagga
gataaccaatacagagttagcgggcaagctatggagttcaagcaactcaatatacatgcc
tgggaggcatttgagaaaggtcaagatattcacatgcaagcagctccatcgcaagctgaa
ttgctctacaaaaattataagatcattaaggagaaattaaaattacaaatgaaagatgcc
attatggagaagtatggcaatgctgcaactgatgctaaactcccaagggaacttcttatg
ggacaaactgagagacaagttgaatatgatcgtgctgggagagttataaaaggcctggag
acttctcttcccaaaagtaagtatgaggaggatgtgtatattaataaccacacaagtgtt
tggggttcatggtggaaggatcatcaatggggttacaagtgctgtaagcaaacaatacgg
aacagttattgcactggtgctgctggaattgaggctgctgaagctgcagcggacctaatg
aaggctaacattgatcgtaaaggagcatctgaagagacacctgttccagcagaggagaaa
aggcttgctacttggggaaatgatgtacctgatgacttgctccttgacaaaaaccaactc
actgaggcccttaaaaaggaggacgaaaggaagaaggaagagaaggatgaaagaaagcgc
aagtataatgtgagatggaatgatgaggttactgctgaggagatggaggcatatcggatg
aaaagaatacatcatgatgatcccatgaaggattttctgcactaa
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