Quercus lobata (valley oak): 115951177
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Entry
115951177 CDS
T07350
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115951177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115951177
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115951177
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115951177
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
115951177
NCBI-ProteinID:
XP_030924218
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All DBs
Position
7:complement(20333769..20358630)
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AA seq
896 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TLDPREKAKSETRDWLNTVVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHK
AHIMKLELILRLLDNDELSPEQVNDVKDFLEDYVDRNQEDFDEFSDVDELYITLPLDKVE
SLEDLVAIGPPSLVKGTPVLSLKTSLVASAPQVPATAAPNQQGVVQEQVEDSASQDSNSD
TVARTPPAKSSVIGSSALSTPVGSHATPILPGHNLSSVSTATVSLPGSASVRGAMENSGP
VNSSSPLSLPTAAKEEDSFPGRRSSPSLSDTGLVRGIGRGGLSSQPSASIPLSPSNVVPT
NGAVGAVPTASDMAKRNILGADERLGSSGMVQPLVSPLSNRIILPQAAKANDGTGLIDTS
NVGDPVTIGGRIFSPPVVPGMQWRTGSTFQNQNEAGQFRGRTEIAPDQREKYVQRLQQVQ
QQGHSTLLSMPPLSGGNHKQFSAQQQSPLLQQFNSQNSSVSPQAGLGLGVQAPGLNNVTS
ATLQQQPNNIHQQSNQQALMSGGPKDADVGHVKVEEQQQQQNLPDDSTIDSTTGSGLGKN
LMNDDDLKTSHAIDAPAGVSGSLIEPAQVPRDIDLSPGQPLQTNQPSGSLGVIGRRSVSD
LGAIGDNLGGSTVNSGGTHDQSYNLQMLEASYYKLPLPKDSERARSYTPRHPAITPPSYP
QVQAPIVNNPAFWERLGLDVHNTDTLFFAFYYQQNTYQQYLAAKELKKQSWRFHRKYNTW
FQRHEEPKVATDEYEQGTYVYFDFHIASDDPHHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccgcaaacttcagggcgagatagatcgagttctcaagaaggttcaagaa
ggcgtcgatgtgttcgacagtatttggaacaaggtttacgatacggataatgcgaaccag
aaggagaagttcgaggcggacttgaaaaaggagattaagaaattacagaggtacagagac
caaatcaagacatggattcagtctagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctggtggatgctcgcaaacttattgagcgtgaaatggaaagatttaagatc
tgtgaaaaggagactaagacaaaagcattttctaaagaaggactgggtcaacaacctaaa
actctggatccaagggagaaggctaaatcagagacaagagattggttgaacactgtggtt
ggggagttggagtctcagattgatagctttgaagctgagttggaggggctatctgttaag
aagggaaagactaggccaccaagactgacacatttagagacatccattacccggcacaag
gctcatattatgaagttggaactaatcttgaggctactggataatgatgaactgagtcct
gagcaggttaatgatgttaaggactttttggaagactatgtggaccgtaatcaggaggat
tttgatgaatttagtgatgttgacgagctttacatcacgttaccattagacaaggtggag
tctcttgaagatttggttgcaattggtcctcccagtcttgttaagggtacacctgttctt
agcttgaagacatcattggtagcatcagcacctcaagtgcctgccactgctgcccctaat
cagcagggtgttgtccaggagcaagttgaagattcagcttcccaggatagtaattctgat
actgttgcaagaactccacctgccaaaagtagtgtaattggttcttctgcattatcaaca
ccagttgggagtcatgcaacccctattcttccaggtcataatttatccagcgtctccact
gctacagtgagccttccaggttcagcttctgttcgaggtgccatggagaacagtggtcct
gtcaattcttcttctcctttgagtctgcctactgctgcaaaggaagaagatagttttcct
ggccgcagatcatctccatctctttctgatactggacttgtaaggggcattggtagaggt
ggcctctccagccaaccatcagctagtattcctcttagtcctagcaatgtagttcctacc
aatggagctgttggtgcagtccctacagcctcggacatggcaaagagaaacattttagga
gctgatgagagacttgggagtagtggcatggtgcagcctttggtttccccactaagtaat
agaattattttgcctcaggctgccaaggcaaatgatggaactggcttgattgatactagt
aatgttggtgatcctgtaactataggtggcagaatcttttcccctcctgtggtccctggt
atgcagtggaggactggaagtacctttcagaatcagaatgaagcaggtcaatttcgtgga
agaactgaaattgcacctgatcagcgggagaaatatgtgcaacgccttcaacaagtgcaa
caacaaggtcacagtacccttcttagcatgccgcctctttctggaggaaatcataagcag
ttttctgctcaacagcaaagcccactcttgcagcagtttaattcccaaaactcatctgtc
tctcctcaagctggtctgggacttggagttcaggcaccaggtctcaataatgttacttct
gccaccttacagcagcagccaaataacatccatcagcaatctaatcaacaggcattgatg
tcaggtggtccaaaagatgctgatgttggccatgtgaaggttgaggagcagcagcaacaa
caaaatttacctgatgattcaaccattgactctacaactggttctgggcttggaaagaat
ctcatgaatgacgatgatttgaaaacctctcatgccatagatgctccggctggggtatct
ggctctttgatagagcctgctcaagtgccaagagatattgatctctctcctgggcaacct
ttgcaaactaatcaaccttccggaagccttggtgttattggccgaagaagtgtttctgac
cttggtgccattggtgataaccttggtgggtcaactgtaaactctgggggaacacatgat
caatcatacaatttgcagatgcttgaggcttcatattataaacttcctctgcccaaagac
tcggaacgtgcaagaagttatactccaaggcaccctgcaattactcctcctagctatcct
caagtacaggcgccaattgttaataatcctgccttctgggaacgattaggtcttgatgtt
cacaacactgatacgctgttctttgcattttactatcaacagaacacttatcaacaatat
ttggctgcgaaagagttgaagaaacaatcttggagatttcacaggaaatataacacatgg
tttcaacgacacgaggaaccaaaagtagccacagatgaatatgaacaggggacgtatgtg
tactttgattttcatattgccagtgatgacccccatcatggatggtgtcaaaggatcaag
acagaattcacttttgagtacaactatcttgaagatgaacttattgtatag
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