Quercus lobata (valley oak): 115951570
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Entry
115951570 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115951570
09122 Translation
03013 Nucleocytoplasmic transport
115951570
03015 mRNA surveillance pathway
115951570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115951570
03041 Spliceosome [BR:
qlo03041
]
115951570
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115951570
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115951570
Spliceosome [BR:
qlo03041
]
Complex C
Other components
EJC/TREX
115951570
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115951570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CMS1
Motif
Other DBs
NCBI-GeneID:
115951570
NCBI-ProteinID:
XP_030924608
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All DBs
Position
7:11105512..11107367
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AA seq
217 aa
AA seq
DB search
MRLRVKEREFGRRRQEATIGGGGCDENYPCRFGRACFRERPPLGRELKSSLNSAIIVIVV
VVVVVGTPGKILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM
MFSATLSKEIRPVCKKFMQEPMEIYVDDETKLTLHGLVQHYILLNEAEKNRKLNDLLDAL
DFNQVVIFVKSVTRAAELNKLLTSGTRAAELNKLLCS
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgagattgagagtgaaagaaagagagtttggtcgaaggagacaagaagccaccatcgga
ggtggtggttgtgatgaaaattatccttgccgatttgggcgggcttgtttcagagagaga
ccaccactcggtagggaattgaaatcaagtcttaattctgctattattgttattgtggtt
gttgttgttgttgttggaacacctggaaaaatattggctctagcaagggataaagatctt
ggattgaagaatgtgaggcattttattcttgatgagtgtgataagatgctagaatcactg
gacatgaggagagatgtgcaggagatcttcaagatgactcctcatgacaagcaagttatg
atgttttcagcaactctcagtaaagagatccgccctgtttgcaaaaaatttatgcaagag
ccaatggaaatttatgttgatgatgagaccaagttgactcttcacggtcttgtacagcac
tacattttattgaacgaggcagagaaaaaccgcaaattgaatgaccttcttgacgcattg
gacttcaatcaggttgtcatttttgtcaagagtgtgaccagagctgctgagctgaacaag
ttacttacgagtgggaccagagctgctgagttgaacaagttactttgttcatga
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