Quercus lobata (valley oak): 115952019
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Entry
115952019 CDS
T07350
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115952019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115952019
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115952019
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115952019
RNA polymerase I system
115952019
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
115952019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW2_Spt5
KOW6_SPT51-2
KOW4_SPT5
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
115952019
NCBI-ProteinID:
XP_030924978
UniProt:
A0A7N2M6V7
LinkDB
All DBs
Position
7:38794705..38797560
Genome browser
AA seq
945 aa
AA seq
DB search
MSRRRHREEYEEEQEERAKSSRKRARSVFIDDVAEEDDDDDEEDDDDEDFDGGRGKKQQK
RKKSSGFRYIDDEAQVDTDEDEEEGEDGEDDFIDGGADLQDDGDDDDRRRRMYRRPLLPR
EDEEQEEDVEALEKRIQERYALREEYEGDEEGEVEHQYYLPSVKDPKLWMVKCAIGHEQE
VVVCLMQKCIDKGSELNIRSAIALDHLKGYVYVEADKEAHVKEACKGLRNIFASQKGMPK
LVPIKEMTDVLAVENKAKAMDLCWVRIKNGTYKGDLAKVVNVDNVRQRVTVKLIPRIDLQ
ALAVGNKSGSKGRGVVVPPPRFMNIDEARELNITVKRGRDPMTGDYFDKIDAMMFKDGFL
YKKVSMKSISSQNIKPTLDEVEKFGDITANLSTLFANRKKGHFVKGDAVIVVKGDLKNLK
GWVEKVEEDNVHIRPDMKGLPKTISVNEKELCKCFEPGNHVKVVSGTVEGTTGMVVKVEQ
HVLVILSDTNKEHIRVFADNVVESSEVITSGTLTRIGDYEIHDLVLLNNKSFGVIIGIES
TEACRVLMAVPDIHGQVALVKLREIKFKIDKKISVQDQNQNTVATKDVVKIVTGPCKGKQ
GPVQHIYGGVLFIYDRHHLEHAGFICAKANCCVIAGGSRANGARNYGAQSRSNPQLSNKF
SRGHDDLVGKRVMIRQPLYKGCHGIVKEVTGSLVRVELESQTKVVTVDRKFISEKRNVVD
YNSTPYRGSETPMHPSRTPMRDNIPGTTPIHDGMRTPMRDRAWNPYTPMRDQAWNPYTPS
TPQYQPGSPSPYDSSSSPYVNAPSPYLPSTPNSASYLPSTPGTGGLDTMSPVIGGDNEGP
YFMPDILVNVRRLGEEESAVGIVREVLMDGSCRIVLGENGETMTALPDEMEVVAPRKNDK
VKIMAGVQRGTTGKLIGVDGSDGIVKVDDSRDVKIIELVLLAKLT
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccgtcgtcacagagaagagtacgaggaggagcaggaagagagagccaaatcg
agcaggaagcgcgccagatcagttttcatagacgatgttgccgaggaggatgatgatgat
gatgaagaagatgacgacgatgaagattttgatgggggcagaggcaagaagcaacagaag
aggaagaagagtagcggctttcgatacatagatgatgaggcacaggtcgacactgacgag
gatgaagaagaaggtgaggatggcgaggatgacttcattgatggcggtgcagatcttcaa
gatgatggcgatgatgatgatcgtcgtagaagaatgtatcgtcgcccattactgccacga
gaagatgaagaacaagaagaagatgttgaggctcttgagaagagaatccaagagagatat
gctttgcgcgaagagtatgaaggagatgaagaaggtgaagtagagcatcaatattatttg
ccttctgttaaagacccgaagctgtggatggtgaagtgtgcgattggacatgaacaagaa
gtggttgtttgcttgatgcagaagtgtattgataaagggtctgagttgaatataaggtct
gctattgctcttgatcatctcaaaggttatgtctatgttgaagcagacaaagaagcccat
gttaaggaggcttgcaaaggtttgcgcaatatatttgcttcccagaaaggaatgcctaag
cttgttcctatcaaagagatgaccgatgttcttgcggttgaaaacaaagcaaaagcaatg
gatctttgttgggtcagaatcaagaatgggacatacaaaggagatcttgcaaaggtggtg
aatgttgataatgtgaggcaaagagttactgtgaaattgattccaaggatagacttgcag
gctcttgctgttggaaacaaatcgggttcgaagggtagaggtgttgttgttcctcctcca
cgttttatgaacattgatgaggctagagaactgaatattactgtaaagcgcggtcgagat
ccaatgaccggagattattttgacaaaattgatgccatgatgtttaaagatggtttcttg
tacaaaaaggtatcgatgaaatcaatcagctctcaaaatataaagcctactttggatgaa
gttgaaaagtttggtgatataacagccaatttatcaactttgtttgcaaatagaaagaaa
gggcattttgtgaagggtgatgcggttattgttgtcaagggagatctcaagaacttgaaa
ggatgggttgagaaagtggaggaagataatgttcacatcagaccagatatgaagggcctt
cctaaaactatttctgtgaatgaaaaagagctttgtaagtgtttcgaacctgggaatcat
gtcaaggttgtctctggtacagtggaaggtacaactggtatggttgttaaggtagagcaa
catgtcctcgtaattttgtctgatacaaataaggaacacattcgtgtatttgctgataat
gttgtggaaagctctgaggtaattacttctggtactctcacaagaattggggactacgag
attcatgatctagtgcttctaaataataagagctttggtgtaataattggcatagaaagt
acggaagcttgtcgagttctcatggcagttcctgacatacatggtcaggttgctcttgtg
aaattgagagagatcaaattcaagattgataagaaaatcagtgtgcaagatcagaatcag
aatacagtagctacaaaagatgttgtgaagatcgttacgggtccttgcaaagggaaacaa
ggccctgtgcaacatatatatggaggagtcttgttcatctatgatcgccatcaccttgag
catgctggctttatctgtgctaaagccaattgttgtgttattgctggaggatcacgtgcc
aatggtgctagaaattatggtgctcaatctcgcagtaatcctcaattgtcaaataaattt
tctcgagggcatgatgatttggttggtaaaagagtgatgatccggcagcctctttacaaa
ggctgccatgggattgtcaaagaagttacgggctcattagttcgggttgaattggagtca
cagactaaagttgtcacagttgatcgcaaatttatctctgaaaaaaggaatgtggttgat
tataattctaccccatatcgcgggagtgagactccaatgcatccttctcgaactcctatg
agggataatattcctggaacaacaccaattcatgatggcatgagaacacctatgcgtgat
cgagcatggaatccttatacacctatgcgtgatcaagcatggaatccttatacaccgagt
actccacagtatcaaccaggaagtccttctccatatgatagtagttcttctccttatgtc
aatgctcctagcccttacttgccttcaactccaaattcagcttcctatcttccaagcact
cctggaactggtggtctggatacaatgtctcctgttataggtggtgacaatgaaggacca
tatttcatgccagacatactggtaaatgttcgcaggttgggagaggaagaatctgctgtt
ggaattgttcgagaggtgcttatggatgggtcttgtaggattgttcttggcgaaaatggt
gaaaccatgacagctcttcctgatgaaatggaggtggtggcaccaaggaaaaacgacaag
gtcaaaattatggctggtgtgcaacgtggtaccactgggaagttgattggtgtggatggc
agtgacggaattgtgaaggtggatgactctcgtgacgttaagattatagaattggttctt
ttggcaaaactaacatag
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