Quercus lobata (valley oak): 115952223
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Entry
115952223 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115952223
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115952223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qlo03000
]
115952223
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115952223
04121 Ubiquitin system [BR:
qlo04121
]
115952223
Enzymes [BR:
qlo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115952223
Transcription factors [BR:
qlo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
115952223
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115952223
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115952223
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115952223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
zf-UDP
Baculo_IE-1
Rtf2
RING_XB3-XBAT31
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
115952223
NCBI-ProteinID:
XP_030925161
UniProt:
A0A7N2M916
LinkDB
All DBs
Position
7:45412972..45421481
Genome browser
AA seq
994 aa
AA seq
DB search
MAEKGEKTCPICAEEMDFTDQQLKPCKCGYQMCVWCWHHIMEMAEKDGTDGRCPACRAPY
DKEKIVGMAANCERLVAERNLERKQKLQKSKPKAASEGRKHLNDVRVIQRNLVYIIGLPL
NLADEDLLQHREYFGQYGKVMKVSISRTANGVIQHSSNNSCCVYITYSKEEEAARCIQSV
HSFVLDGRSLRACFGTTKYCHAWLKNLPCSNSDCLYLHDYGSLEDSFTKDDLVSAFERSR
IQQIIGATNNLHRRSGNVLPSPAFENANTSISTAKPVARSPSNYTSNEVRGPPADNGSGR
SSVPPNAASWVMRVSTSLPPVTSISVSGPSNQNPDISDNSQVLPLDVMTERSTHDATKSM
IDEESWEVHSNAKLKPIESTKQFVDGNCQVVESNTNAESILDSTRATVTSSKHFSHLLAA
KGINQNIAAQSTSTSSLELIKPSYSPGFLKDGSIHADGNVQGLCSDLSSTNNHNHFKQNF
SGSVGPEGDLTQTKGSQQDDKELSGEASMSTAFMEAALMEGLLGLDDQQPKDFKGIHQQP
SVSCSPCLYQNLNQPSCHFWQHGEVSKQSNVVQDPRIVCMKQEEDAYQLTSESTVSSNGF
NDNKINILPDFGGTFGSSSVFSERGLGNLGIYEKPVLGVNNSAESDIGESSIISNILSLD
IDTSEDSLTSPHNLVKFLSETGKQHASIKVPNLQKAQDKNQSRFSFARQEDYLNQISDFE
NSLGSIRHVPNEYSTSRDFVEKKHPYIDTYEHNFSSGSFLESGRYPTSSDPFTSSKLPVS
RAPTSIPPGFSVPTKATPPGFPSHGRMEQAFDPSAYRLLQNSARTGISGFTEDVESIDPA
ILEVGKGILKRGLNNAGFNMRPTLSQQFSPFEQDPRLNMLMQQSISPQQNLGFPDNFGNR
FSPPHDAYRFSPMLLDQVQPNNPSALLTAQQIGNMQMSNGHWGGWNEARNVSGLGISELL
QNERMGCNKFIPVYEDGKFPMSTFSNLPNREFGM
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaagggggaaaaaacatgccctatatgtgccgaggaaatggatttcacagac
cagcaattgaagccatgcaaatgtggttatcagatgtgtgtttggtgttggcatcacata
atggaaatggctgaaaaagatggaactgatggtcgttgtccagcatgtcgtgcaccttat
gacaaagaaaagattgtggggatggcagcaaattgtgaaaggttagtggctgaaagaaat
ttggagcggaaacagaaactacagaagtcgaagccgaaggcggcttctgaaggaaggaaa
catcttaatgatgttagagttattcaacggaacctagtgtatataattggattacctctt
aaccttgcagatgaagatcttcttcagcacagggagtattttggccagtatgggaaggtt
atgaaggtgtccatttctcgtacagcaaatggggttatccaacattcttcaaacaacagt
tgctgtgtgtatataacatactcaaaagaggaggaagcggctcgatgtattcaatcagtg
cacagttttgtgttagatggtagatccttgagggcctgctttggaaccacaaaatattgc
catgcgtggttaaaaaatttgccttgcagcaattcagattgtttgtatttgcatgattat
ggctctttggaggatagttttaccaaagatgacctagtttcagcctttgaaaggagtaga
attcaacaaatcattggtgctacaaataatttgcatcggcgttcagggaatgttttacct
tccccagcatttgagaatgccaatacgagcatatcaacggccaaaccagttgcgagaagt
ccttcaaattacactagcaatgaggttcggggacctcctgcagataatggctccggaaga
tctagtgtacctcctaatgctgcctcttgggtcatgcgtgtctccactagtctgccacca
gtgacaagtatttctgtttctggaccttccaatcaaaatcccgatatatctgataattcc
caggttcttccattagacgtaatgactgaaagatctacccatgatgcaacaaaatctatg
atagatgaagaaagctgggaagtgcattctaatgctaaattgaagccaatagagtctacc
aaacagtttgttgatggaaattgtcaagtagttgaatccaatactaatgcagagagtatt
ctagattcaacccgtgccactgtgacttccagcaaacacttttctcatctattagcagct
aagggcatcaatcaaaatattgcagcgcaatccaccagcacaagctctcttgaactaatt
aaaccatcctatagtccaggtttccttaaagatggaagtattcatgcagatgggaatgtc
cagggcttatgctccgatttatcatcaacgaacaatcataatcattttaaacagaacttc
tctggttcagttggtccagagggtgacctaactcaaacaaaaggttcacagcaagatgat
aaagagctttctggtgaagcttcaatgtcaacagcttttatggaagctgcactcatggaa
ggcttactaggtttagatgatcagcagccgaaggatttcaagggtatccatcagcagcca
tccgtctcttgttcgccttgtctatatcagaatttaaatcagccaagctgtcatttctgg
cagcatggtgaggtatccaaacaaagtaatgttgttcaggatcctagaattgtatgcatg
aaacaagaggaagatgcttatcaattgacatctgagagtactgtatcatctaatggcttc
aatgataataaaattaatattcttcctgattttggtgggacgtttggttcatctagtgtg
ttctctgagaggggattagggaatttgggcatttatgaaaaacctgtacttggtgttaac
aatagtgctgagtctgatattggagagagcagcataatctcaaatattttgtctttggat
attgatacatcggaagattcattaacctcccctcacaatttggtgaagttcttgagtgaa
actggtaaacagcatgcttccattaaagtaccaaatttacaaaaagcacaagataagaat
cagtccagattctcatttgccagacaggaggattacctaaatcaaatatctgattttgag
aattctttgggtagtatcaggcatgtgcccaatgaatattccacctcacgtgattttgta
gaaaagaagcatccttatatagacacatatgagcataacttttcatccggtagttttttg
gagtctggtaggtatcccaccagcagtgatccttttacgtcctctaaacttcctgtttct
agagccccaacttcgattccaccgggattttcagtgccaaccaaggcaacgcctccagga
tttccttctcatgggagaatggaacaggcatttgacccttctgcatatcgtttgctgcaa
aattctgcaagaactggaatttctggcttcaccgaagatgttgagtctattgatccagca
atactggaagttggtaaagggattctaaaacgggggttgaataatgctggctttaatatg
agaccaactctatctcaacagtttagtccttttgagcaagatccaaggcttaacatgctt
atgcaacaatctatttccccacagcagaacttaggattcccagataactttgggaataga
ttctctcccccacatgatgcatatagattttccccgatgcttctagatcaagttcaaccc
aacaatccatctgcgctattgactgctcaacaaattggtaatatgcagatgtcaaatggc
cattggggtggatggaatgaggcgaggaatgttagtggtctgggtatatcagaattactt
caaaatgagaggatgggatgtaacaagtttattcccgtttatgaggatggaaagtttcca
atgtctactttcagcaatctacccaacagagaatttgggatgtga
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