KEGG   Quercus lobata (valley oak): 115952749
Entry
115952749         CDS       T07350                                 
Name
(RefSeq) UBP1-associated protein 2A-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115952749
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115952749
   03041 Spliceosome [BR:qlo03041]
    115952749
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     115952749
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     115952749
Spliceosome [BR:qlo03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    115952749
SSDB
Motif
Pfam: RRM_1 RRM_7 Cut8 TFIIA
Other DBs
NCBI-GeneID: 115952749
NCBI-ProteinID: XP_030925841
LinkDB
Position
7:15525273..15528692
AA seq 504 aa
MARKRKLDSQTQSGEPTIEPPQKQQQQQQQQQQQQQQENIEYEEVEEEVEEEVEEEVEED
EDEDDDDEDDEEQQQQNAANQTVNSTSTSAGADGDDDDDEPIQNLLEPFSKDQIINLLRE
AADKHRDVADRIRKVADEDPAHRKIFVHGLGWDTTAETLTAVFKQFGEIEDCKAVCDKIS
GKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLATIGPVPMGNSAVAAATSSVAAP
AAPLSEYTQKKIYVSNVGAELDPRKLLAFFARYGEIEEGPLGLDKVTGKPKGFCLFVYKT
VESAKKALEEPHKNFEGHILHCQRAIDGPKPNKSQQHQHQQQQQHQHHQNPNPHTVPFQR
NDNPGYVAGAPGTGTGHLMAPAAAGAGMGYNQGAAAAQALNPALGQAITALLASQGAGLG
LTNLLGTLGSAAAAVNPGVPAAAGHGMQGAYPSQTNISPGVMGGYGNQGGLQSGYPSQQM
GQGSSGRGQHGAGQYGNMAPYMGH
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggcgaggaaacgaaagctcgattcccaaacccaatccggcgaaccaacaatcgaacct
ccacagaaacaacaacaacaacaacaacaacaacagcaacagcaacaacaagaaaacatc
gaatacgaagaagtcgaagaagaagttgaagaagaagtagaagaagaagtggaagaagac
gaagacgaagacgatgacgatgaagatgacgaagaacaacaacaacaaaatgcggccaat
cagacggttaattccacctccacctcagccggcgccgatggcgacgacgacgacgatgag
ccgatacagaaccttctggaacctttcagtaaggaccagattataaacctactccgcgaa
gcagcggataagcaccgtgatgtggcggatcggatccgaaaggtggcggatgaggacccg
gctcaccgcaagatcttcgtccacggtctcggctgggacaccaccgccgaaaccctaacc
gccgtgttcaagcagttcggcgagatcgaagattgcaaggcggtttgcgataagatctca
ggtaaatccaagggttacggtttcatcctcttcaagagccgccgtggcgcccggaatgct
ctcaagcagcctcagaaaaagatcggaaatcggatgacggcgtgccagctggcgacgatt
gggcctgttccgatgggcaattctgcggtggcggcagctacgtcttcggtggcggccccc
gcggcgccgttatcggagtatacgcagaaaaagatatatgttagtaatgttggggcggag
ttggatccaaggaaattgcttgctttctttgctaggtatggagaaatcgaagaaggaccg
ttgggacttgataaggttactgggaagccaaaagggttttgtttgtttgtttataagaca
gttgaaagtgctaagaaggctctagaagagcctcacaagaattttgagggccatatattg
cattgccagagggctattgatggtcccaagccaaacaagtctcagcagcatcaacatcag
caacagcaacagcaccagcatcaccagaacccgaacccacatactgtgccattccagagg
aatgataatcctggatatgttgctggagcgcctggtactggaacaggtcatttgatggct
cctgctgcggccggtgcgggaatggggtataatcagggagctgcagcagctcaggctttg
aatcctgcacttggacaggccataacggcgttgctggctagtcagggtgctggattgggg
ttgactaatttgttggggacgcttggttcggctgcggctgctgtgaacccgggtgtgcct
gctgcagcagggcatgggatgcagggtgcttatccgagccagacaaatattagtcccgga
gtgatgggagggtatggaaatcaaggaggattgcagagtggttacccgagtcagcagatg
ggtcaaggcagttctggaagaggccagcatggagctgggcagtatggtaacatggctcct
tacatggggcactag

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