KEGG   Quercus lobata (valley oak): 115952759
Entry
115952759         CDS       T07350                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
qlo  Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:qlo04121]
    115952759
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115952759
Enzymes [BR:qlo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     115952759
Ubiquitin system [BR:qlo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    115952759
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    115952759
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 zf-RING_5 zf-C3HC4 zf-rbx1 DEAD zf-RING_UBOX ResIII Prok-RING_4 zf-ANAPC11 Rad50_zn_hook RING_XB3-XBAT31 AAA_34 Rtf2 CAA_C HycH zf-RING_6 Zn_ribbon_IFT122_C
Other DBs
NCBI-GeneID: 115952759
NCBI-ProteinID: XP_030925862
LinkDB
Position
7:12133796..12143297
AA seq 884 aa
MEDEVDPVSLFLSLEQWQDPDEFSLLQDFPPSQPPPETFMVGFIMAKIVGIQYYSGTISG
REMVGLVREPLNTYDPNAIKVLNTRTVQVGHIERNVASVLAPLIDSLAIHVEGIVPNTRE
AGNRFKIPCQVHVFARADAFQTVKSAISRGGLHLISDSDPSFTLSEAAVVKEKKKGVEEF
KSVDEIFKLVDENASKKGRLEGLEPPQNVIKSKLFKHQKEGLGWLVNRENSNELPPFWEE
KDGSYVNILTNFSTEVRPEPLRGGIFADDMGLGKTLTLLSLIAFDKFDSASVNEIRSGSV
DLENLDEIGEEDGDSSKKGKRGRVSKKGTLSRKKRKINDARLDANVIRKSAGVCEGSSSN
FVIKTTLIVCPPSVFSTWVTQLQEHTWRGKLKVYMYYGERTNDVEELKKYDIVLTTYSTL
AAEVQRPWSPVSKIEWWRVILDEAHVIKNVNARQSEAVTDLKAKRRWVVTGTPIQNGSFD
LFSLMSFLRFEPFSIKSYWQSLVQRPLSQGDQKGLSRLQVLMATISLRRTKDKGLVGLPP
KTIEICYVELSKEERELYDNMEGEAKSVFRNYFNAGRQMPNYSAVLSILLRLRQICIDLA
LCPSDLKSLLPDHNIEDVSNNPELLKKMVEVLQEGEDFDCPICMSPPTNIVITRCAHIFC
QACILKTLQRKTCCPLCRRPVQQSDLFTAPPENSDADDAGVSSSKTTASSKVSTLLKLLV
ESRDQNPAIKSVVFSQFRKMLILLEKPLKDAGFKILRLDGSMNAKRRANVIEEFAIPGPD
SPTVLLASLKASGTGINLTAASRVYLLEPWWNPAVEDQAMDRVHRIGQKEDVKIVRLIAR
NSIEERILELQARKQKLAREAFGGRGPKDRREIGYEDLRVLMSL
NT seq 2655 nt   +upstreamnt  +downstreamnt
atggaagacgaagtggacccagtatcgcttttcttgagtctagagcagtggcaagaccca
gatgagttttcacttctgcaggactttccaccgtcacagcctccgccggagactttcatg
gtgggtttcataatggcgaaaatagttggaatccaatactactcgggcactataagcggt
cgagaaatggtgggtttggttcgcgagcctctcaatacttacgacccaaacgctatcaag
gttctcaacactcgcaccgtccaagtcggccacatcgaacgcaacgtcgcctcggtcttg
gcgcctttgatcgactctcttgcgattcacgtcgaaggcattgtgccgaacactcgtgag
gctgggaataggttcaagattccttgccaggtccacgttttcgcgagggccgacgcgttt
cagaccgtgaaatcggctatttcgcgaggtgggttgcacttgatttcggattctgacccg
tcttttactctgtcggaggcggcggtggtgaaggagaagaagaagggtgttgaggaattc
aagagcgtggacgaaattttcaagcttgtggacgagaatgcgagcaagaaaggtcgtttg
gaaggtttggaaccgccccagaatgtgatcaaatcgaagctctttaagcatcagaaagaa
gggttggggtggttggttaatagagagaattcgaacgaattgcctccgttttgggaggag
aaagatggaagttatgtcaatatattgacgaattttagtactgaagtgcggcccgagcct
ttgcgtggtgggattttcgcggatgatatggggttgggtaagactctaactttgctgtct
ttgattgccttcgataaatttgatagtgcttctgttaatgaaattcgtagtggtagcgta
gatttagaaaacttagatgaaataggtgaggaggatggggatagtagcaagaagggtaag
agaggtagagtaagtaagaagggtactttgtcacggaagaaacgtaaaattaatgatgca
agattagatgccaatgtaataaggaagtctgctggtgtttgcgagggctcttctagtaat
tttgttatcaagacaactttaattgtctgcccgccttctgtattttcgacatgggtaaca
cagcttcaagagcatacttggcgaggaaagttgaaagtgtatatgtattacggggagaga
acaaatgatgttgaggagcttaagaagtatgatatagtattgacgacgtatagtacactg
gctgctgaagttcaacggccatggtcccctgtgagtaagattgagtggtggcgggtcatt
ttggatgaggcacatgtgataaagaatgtgaatgctcgacaaagtgaagctgtcactgac
ttgaaagccaagcggaggtgggttgttacgggaacaccaattcagaatggctcatttgat
ttgttttctttgatgtcattcttgcggtttgagccattttcaattaagagctattggcaa
agcttggtacagcgtccactttctcagggggaccaaaagggcctctcacgtctacaggtt
ctaatggcaaccatttctttgcgaagaacaaaagacaagggactggttgggttgccacct
aaaactatagagatttgttatgtggaactttctaaagaagaacgtgaattgtacgacaat
atggaaggggaagctaagagtgttttccggaattattttaatgctggtcgacagatgccc
aactactcagctgtacttagtatactcctacgacttcgccagatatgtattgatttggcg
ttgtgcccttcagatctcaaatcgttacttcctgatcacaatattgaagatgtatccaac
aacccggagttgctgaaaaagatggttgaggtactgcaagagggtgaagattttgactgt
ccaatttgcatgtcaccaccaaccaatattgtaattacacgctgtgctcacattttttgc
caagcttgtattttaaaaactctacagcgcaaaacctgctgccccctttgtcgccgtcct
gtgcaacagtctgacctgttcacagcccctccagaaaattctgatgctgatgatgctgga
gtatcctcttcaaaaacaacagcatcttcgaaagtttccactcttctaaaacttcttgtg
gaatcaagagatcaaaacccagctataaaatcagtagtattttcacagttccgaaagatg
ttgatattacttgaaaagccactgaaagatgctggtttcaaaattttgcgcttagatggg
tctatgaatgcaaagagaagggctaatgtaattgaagaatttgcaattcctggaccagat
tcacccacagttttgcttgcaagtcttaaggcctcaggaacaggtataaacctcacagct
gcttctagagtctacttgttggagccatggtggaacccagctgttgaggatcaggcaatg
gatcgggttcaccggattggacagaaggaggatgtgaagattgtgaggttgatagcccga
aacagcattgaagagaggatattagagttacaggcgagaaagcagaaacttgcaagagaa
gcttttggaggtaggggtccaaaggataggagggagattggttatgaagatcttcgtgtc
ctcatgtctctataa

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