Quercus lobata (valley oak): 115952783
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Entry
115952783 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115952783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115952783
03012 Translation factors [BR:
qlo03012
]
115952783
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115952783
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115952783
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115952783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
BEX
T2SSE
NACHT
Nop5_56-rel_N_Arc
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
115952783
NCBI-ProteinID:
XP_030925912
UniProt:
A0A7N2M6F8
LinkDB
All DBs
Position
7:36405160..36415561
Genome browser
AA seq
1043 aa
AA seq
DB search
MSLRSFGANYSYCYHCYHSLSSHISLARRFSASQLRISARAMSYRPNFQGGRRGGGPNSR
GRGGARRGGGGGGGGRGGGRGEQRWWDPVWRAERLRQQQAEMEVLDENEWWGKIEQMKRG
GEQEMIIKRNFSRADQQTLYDMAYQLGLYFHAYNKGKTLVVSKVPLPDYRADLDERHGST
QKEIRMSTEIERRVGSLLNSSESHGALTSIDSSVAISQGGKGKPSSSGVNIIKPDSLSEI
DSAKDNLSLELKQRQEKMKVSDSSRAMRSFRERLPAFKVKSEFLKAVAENQVLVVSGETG
CGKTTQLPQFILENEISCLRGADCSIMCTQPRRISAISVAARIASERGESLGETVGYQIR
LEAKRSAQTRLLFCTTGVLLQQLVQDPKLAGVSHLLVDEIHERGMNEDFLLIILCDLLPR
RPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVAESFLEDVLEKTRYNIKSEFDNF
DGNSRRRRRQQDSKKDPLTELFEDADIDSQYKNYSVSTRKSLEAWSGSQLDLGLVEATIE
YICRHEGDGAILVFLTGWDDISKLLDKVKANNFLGDPSKFLVLPLHGSMPTINQREIFDR
PPPNKRKVVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQR
RGRAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTIGSFLAKAL
QPPDALAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPAL
TIAAALAHRDPFVLPINRKEEADEAKRSFAGDSCSDHIALLKAFEGWKDAKRNGKERAFC
WDNFLSPVTLQMMDDMRMQFVDLLSGIGFVDKPRGANAYNQYSHDLEMVSAILCAGLYPN
VVQCKTRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYVRDSTNIS
DYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRTELDKLLNRKIEEPGLD
ISMEGKGVVAAAVELLHSQTIHY
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcgctcattcggcgctaactacagctactgctaccattgctatcactccctc
tctagccacatttccctcgctcggcgattctctgcttcgcagcttcggatctcagctcgt
gcaatgtcttaccgtcccaacttccaaggcggtcgccgcggcggcggccctaacagcaga
ggacgcggtggagctcgccgtggcggcggcggcggcggaggaggccgaggaggaggacgc
ggcgagcagcggtggtgggaccccgtctggcgagccgagcgcctgagacagcaacaggcc
gagatggaagttcttgatgagaatgagtggtggggtaagatagagcagatgaaaagagga
ggggaacaggagatgataattaagcgtaatttcagtcgcgcagaccagcaaaccttatat
gatatggcttatcaactggggctttacttccatgcatataataaagggaagactcttgtg
gtcagcaaagttccattgccagattaccgggcagatctcgatgagcgtcatgggtccaca
cagaaagagattcgaatgtccacagaaattgagagaagagttggaagtcttttgaatagt
tcagagtcacatggggcattaacctctatagattcttctgtagcaatcagccagggaggc
aaaggcaagccatcatcatctggtgttaatataatcaaacctgactccttgtcagagatt
gattctgctaaggacaatcttagtcttgaacttaagcagaggcaggaaaaaatgaaggta
agtgattcttcaagggcaatgcggtcattcagagaaaggcttcctgcattcaaagtgaaa
tctgagtttttgaaagctgttgctgaaaaccaggtattggtagtttcaggggagacaggt
tgtggtaaaacaactcagctgcctcaatttattctggagaacgaaatatcatgtttgcgt
ggtgctgattgcagcataatgtgcactcaaccccgccgtatatctgctatttctgttgca
gctcgtatagcttctgaaaggggggagagtcttggtgaaactgttggttatcagatccgc
ctggaagcaaaacgttctgctcaaacacggttgctattttgtaccacaggagtattactt
caacagttggttcaagacccaaagcttgctggggtgagccatctactagtggatgaaatc
catgaaagaggcatgaatgaagattttttactaataattctgtgtgaccttcttcctcgc
cgtccagatttacgtcttattctaatgagtgctaccattaatgctgatttgttctccaaa
tactttggaaatgccccaactgtacatataccgggattgactttccctgtggcagagtct
tttctagaggatgtgctggaaaaaactcgttacaatatcaagtcagagtttgacaacttt
gatgggaattcaaggaggaggaggaggcaacaagattccaagaaggatcctttaacagaa
ttatttgaggatgctgatattgattctcaatacaaaaattacagtgtatccacaagaaag
tctcttgaagcttggtctggttcacagcttgatttgggtctggtggaggcaacaattgaa
tacatctgtcgccatgaaggtgatggagctattcttgtattccttactggctgggatgac
atctctaagctacttgacaaagttaaagcaaataatttccttggagatcccagcaagttt
ctagtccttcccctacatggttcaatgcccaccatcaatcaacgtgaaatatttgatcgt
cctccccctaacaagaggaaagttgtgctggcaactaatattgctgagagtagtattacc
atagatgatgttgtgtatgtcattgactgtggaaaggcaaaggaaactagttatgatgcc
ctgaacaaactggcttgtctattaccatcatggatttccaaggcttcggcacatcagaga
cgaggtcgtgctggtcgtgtgcaacctggagtttgttatagattgtatccaaagatgatc
catgatgcaatgcttcagtatcagttacctgagattctcagaacacctctgcaagaacta
tgcctgcatatcaaaagtttgcagcttggaacgattggatcatttttggcaaaagcactt
cagccaccggatgctcttgctgttcaaaatgcaatagaacttcttaaaacaattggggct
ctagatgacatggaggaacttaccccacttggtcgccatctttgtactctaccattggac
ccaaatattgggaagatgcttcttatggggtctatctttcaatgcctcaatccagcctta
acaattgcagctgctcttgctcatcgtgacccatttgtgctaccaataaataggaaagag
gaagctgatgaagctaaaagatcctttgctggtgattcttgcagtgaccacatagcactt
cttaaagcttttgaaggatggaaggatgcaaagcgtaatggaaaggaaagagcattctgt
tgggataactttttatccccagttacattacagatgatggatgatatgcgaatgcaattt
gtagatctattatcaggcattggctttgtagacaaaccaaggggtgcaaatgcttacaac
caatatagccatgatttggagatggtctctgcaatcctttgtgctggactctatccaaat
gtggtgcaatgcaaaacaagaggaaaacggacagcattctacactaaagaagttgggaaa
gttgacattcatcctgcatctgtcaatgcaggagttcatctcttccctctaccttacatg
gtttatagtgaaaaggtgaaaacaactagcatatatgtccgagactctacaaatatatca
gattatgctctacttctatttggcggtaatctcatccctagcaaaactggggagggcatt
gagatgcttggtggttaccttcatttctctgcatcgaagagtgttttagagttgatacgg
aaattgcgcactgaacttgacaagcttctaaataggaaaattgaggaaccgggtttggac
atttctatggagggaaagggagtggttgccgctgcggttgagttactgcacagtcaaacc
atacattattaa
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