Quercus lobata (valley oak): 115952785
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Entry
115952785 CDS
T07350
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115952785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115952785
03016 Transfer RNA biogenesis [BR:
qlo03016
]
115952785
Enzymes [BR:
qlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
115952785
Messenger RNA biogenesis [BR:
qlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
115952785
Transfer RNA biogenesis [BR:
qlo03016
]
Prokaryotic type
tRNA degradation factors
115952785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
DUF6293_C
Motif
Other DBs
NCBI-GeneID:
115952785
NCBI-ProteinID:
XP_030925915
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All DBs
Position
7:17518672..17580619
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AA seq
993 aa
AA seq
DB search
MLANPSSSSLFKTPCYSRTLTLTPSNCPRRLLTRKKSRFRSLSLSSSSHIFLPTKTFLGA
TIRAGAAFQEHQPLDSDSDCSPHPYSIKIPVGDRHILVETGHIGRQASGAVTVTDGETIV
YTSVCMADVPSEPSDFFPLFVNYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLR
PTMLKGFNHETQILSWIICRHACSCVLVQHIHIGAFAVFVLLRNSTFTLCLQVLSYDGLH
SPDSLAVTAAGIAVALSEVPNSKAVAGVRIGLVGDKYIVNPTSKEMEESELDLLLAGTDN
AILMIEGYCNFLPEEKLLRAVEVGQDAVRAICNEVEALVKKCGKPKMLDAIKLPPPELYK
HVEEIAGDELVKILQIRNKIPRRKALTSLEEKVLTILTENGYVETDTVSGAAETLPDLFE
DEDEDEEVVVDGEVDEGDVHIKPNSRRSTPLLFSEVDVKLVFKEVTSKFLRKRIVEGGRR
SDGRALDEIRPINSRCGLLPRAHGSALFTRGETQSLAVITLGDRQMAQRIDNLEGADELK
RFYLQYSFPPSSVGEVGRIGAPTRREIGHGVLAERALEPVLPSEDDFPYTIRVESTITES
NGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTQEFGGDGTPLILSDIIGSEDAS
GDMDFKVAGNEEGITAFQMDIKVGGITLPIMRKALLQARDGRKHILAEMLKCSPPPLKRL
SKYAPLIHIMKVKPEKVNAIIGSGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSLEK
SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELTSNWLAKAEDAV
KVGDRIDVKLIEVNDKGQLRLSRRVLLPNTEPDSPNVKQQTDSSTKDIVASQKAPGKGSA
KKVVNVPKDGLAEKNIEQLGDKISTPNLESAPESNPSEDNAQLPQKKFIRRLVSPARDRP
DTNKDKSKGSSKAVSSVSSKDENSLVNGEAKIG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaaaccctagcagtagtagcctcttcaaaactccctgttactctcgaaccctc
actctcaccccttcaaattgccctcgtcgcctcctcaccagaaagaaatccaggttccgt
tccttatcattatcttcatcatctcacattttcttacccaccaaaacctttcttggtgct
actatcagagcaggagccgccttccaagaacatcaacccttggactccgactccgactgt
tctcctcacccttactctatcaaaatccccgtcggtgatagacatattttggttgagaca
ggccacatagggagacaagctagtggtgctgttacagtaacagatggagaaaccatcgtg
tacacatctgtttgtatggctgatgttccaagtgagccttcagatttttttcctttattt
gttaattatcaagagcgtttttctgcagcaggtcggactagtggtgggtttttcaaacga
gaagggaggacaaaagatcacgaggttcttatttgtagattgattgataggcctttgcgc
ccaacaatgcttaagggcttcaaccatgagactcagatactatcttggataatttgcaga
cacgcatgcagctgtgtcttagtccaacacattcacataggggcttttgctgtgtttgtg
ctccttagaaattccacattcacattatgcttacaggttttgagttatgatggtttgcat
tcccctgattctttggcagtcacagcagctgggatagcagtagctctttcagaagtgccc
aactcaaaagcagttgcaggagttcgaattggtcttgttggcgataagtatattgtgaat
cccacatcgaaggagatggaagaatctgagctggacttgttgttagctggtacagataat
gcaatattgatgatagagggttactgtaattttctcccagaagaaaagttgctgcgagca
gtagaagtcgggcaggatgcagtacgagcaatttgcaatgaggtggaggctttggttaag
aagtgtgggaaaccaaaaatgcttgacgcaatcaaattacctcctcctgagctatataag
catgtggaagaaattgctggagatgagttggtgaaaatcttgcaaattaggaacaaaata
cctagaagaaaagctctcacatcattggaagaaaaggttctgactatacttactgaaaat
ggttatgtcgaaacagatacagtttcaggagctgctgaaacattaccagatttatttgag
gatgaggatgaggatgaggaagtggttgtggatggtgaagtagatgaaggggatgttcat
ataaagccaaattcacgaagatctacgcccttgcttttttctgaggtagatgtgaagcta
gtttttaaagaagtaacatcaaaattcttgcgaaagcgcattgtggagggtggtagaaga
agtgacggacgcgccttagatgaaatacgtcctattaactcaagatgtggattacttcca
agggcacatggaagtgctcttttcacccgaggggaaacacagtcattggcagtgattaca
cttggtgatagacagatggcacaaagaatagacaaccttgagggcgcagatgaactgaag
aggttttatctccagtactcatttcctccttcaagtgttggggaagttgggcgaattggg
gcacctactagaagagaaattggtcatggagtgcttgcagagagagcccttgaaccagtc
ttgccttctgaagatgattttccatacaccatacgtgttgagagtaccatcacagaaagc
aatggctcctcaagcatggcatctgtttgtggtggttgcttagcattgcaagatgccggt
gttcctattaagtgctctattgctgggatagcaatgggtatggttctggacactcaggaa
tttgggggagacggaactccacttattctttctgacataattggatctgaagatgcctct
ggagatatggattttaaggttgcaggaaatgaagaaggaataactgcatttcagatggac
ataaaggtgggaggaattacattacccattatgagaaaggcactcctacaagcaagagat
ggccgaaaacacattcttgctgaaatgttgaaatgctcgcctccccccttgaaaaggctt
tcaaagtatgccccattaattcacatcatgaaggtcaaaccagagaaagtaaatgctatc
attggttctggtgggaagaaggttaagagtattattgaagaaactggggtagaggcaatt
gacacacaagatgatggcatagtgaaaattactgcaaaggatttatcaagtttagagaag
tcaaaagctattattagtaatttgacaatggttccaactgttggtgatatctatcggaac
tgtgagatcaaatcaatagctccttacggagtttttgttgagatagcccctgggcgagag
ggactttgccatattagtgaattgacttcaaattggctggcaaaggcagaagatgctgtc
aaagttggagaccgtattgatgttaaacttattgaggtaaatgataagggtcaacttcgc
cttagccgccgagtactacttcctaatacagaaccggatagtcccaatgtaaagcagcaa
acagatagctccacaaaagatatagtggcttctcaaaaagcacctggcaaaggctcagct
aagaaagtagtgaatgttccaaaggatggtttagctgaaaagaacattgaacaactcggg
gataaaattagcacaccaaatttagaaagtgcccctgagagtaatccatcagaggacaat
gctcaactccctcaaaagaagttcatcaggagattggtgagccctgccagagataggccc
gatacaaacaaagacaaatcaaaaggcagcagtaaagcagtcagtagtgtctccagcaag
gatgagaatagtttagtgaatggagaggctaaaattgggtag
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