Quercus lobata (valley oak): 115952802
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Entry
115952802 CDS
T07350
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qlo03009
]
115952802
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
90S particles
Other 90S particles
115952802
Pre-60S particles
Other pre-60S particles
115952802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
Motif
Other DBs
NCBI-GeneID:
115952802
NCBI-ProteinID:
XP_030925939
LinkDB
All DBs
Position
7:793681..810976
Genome browser
AA seq
1178 aa
AA seq
DB search
MPEPEEQAEELLKDGSDICQQLMDRYARSSAPQHRHLLATAAAMRSILASESLSLTPPAY
FAAAIDTAASNSDTLDSTAAAALLSFLSVVLPLVPAQEISAEKAGEAVSVLVNLVGKERG
SDGGLAVATVKAVVKCLGILLGFCDLENWDSLKLGFQTLLDFSIDRRPKVRRCAQDCLVK
AFKSFKSSGVNKAASKLVLSMLKNNMPLAVKLSSLKAVDGSKDDALSKPEHLEVLYMLSV
VKISVPSLSTKVSSKVISEIVKLLNSKFSVLTRHVFQVVEAFFETSRVEVTVPETEKIVD
SLVSYVSSGDKNPVDTDISAATLLKRALDILHDKESSLWIRNLPLVCGCLAGLLSSEASI
ASLASSILKELLSHLADYKTLLTDKDKPSDDEGQESMEASAIKSVCLIFENALATYSGTP
DEHILGVITVLFLNLGEISYVFMKSIVLKLADLMILANGGTSNTDHLRKCIGSAVIAMGP
ERILTLLPISLHADLTCLNIWLIPILKDYVVEASLGYYIENVVPLAKSFERASRKVKKLA
TSQDLQAHAHDLWGLLPSFCCHPTDTYQNVGALAEILITFLKEDSFMHKNIAIALQVLVY
QNKNVLSPKTESAEPNSFAEKDCVLQFRNVPTYSKKIATKNIKALASCSTELLQALTNLF
VDSLPEKRSYLKDAIGCLASITDSSITKMILLSLFERFQFVDGEGEFEKLGSDNQAMIDK
EQGNLSSTEKEIQRCVIMELASSFVEGAKEDLIDLIYKFITHTFEVTNKSGHCEAYHTLS
RILEEHAWFSSSRFVELIDLLLGLKSPVDIASLRSRFASLHILMIHALKMRLEEENTKAF
LILNEIILTLKEGNEEFRKAAYDILLKISASLKDSSAISHAPYHKLIGMIMGYLSGSSPH
IKSGAVSALSVLVYQDADICLSMPDIVPSLLSLLHTKVVEVIKAVLGFVKVLVSCLQAKD
LHRLLSDVVYEVLPWSSVSRHHFRSKVIVIMEIIIRKCGSAVVESVTPEKYKSFLKTVFE
NRHGKTSSKESDAGDTEMMLADSSMKASGSMLEKRKHKAMSSIPEENGSVEQRKRKREKK
NNAYACIPSSNEHHPSSGSGGGLRAVQSARLSHNAKSMKGQSEGRQKKSKRNHDQIMKNH
EKRKEPTNTSKKDEATHIPNASKLSRHKVGRKRQKINK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaccagaagaacaagcggaggagcttttgaaagatggctccgacatctgccaa
cagctcatggaccgttacgccaggtcctccgccccgcagcaccgtcacctcctcgcgacg
gccgccgccatgcgttccatcctcgcctccgagtccctctccctcaccccgcccgcctac
ttcgccgctgccatcgataccgctgcttccaattccgacacgcttgactccaccgcggcc
gccgcgctgttgtcatttctgtccgtcgtgcttccgctggtgccggcacaggaaatcagc
gcggagaaggccggcgaagcggtgtccgtgctggtcaatttggttgggaaggagagaggg
agcgatggaggcttggccgtggccactgtgaaggctgtggtaaagtgtttaggaattttg
ttagggttttgtgacttggagaattgggattctctcaaattagggttccaaactctcctt
gatttctcaattgatcgccgtcccaaggttaggagatgtgctcaagattgtcttgtgaaa
gcttttaagtcttttaaaagctcgggtgtaaacaaggccgcgagcaagttggtactgtct
atgctcaaaaacaacatgcctttggcagttaaattaagtagtttgaaggctgtagatggg
tctaaagatgatgcattgtcgaaacccgaacatttggaggttctttatatgcttagtgta
gtgaagattagtgttccgagtctttctacaaaagttagttcaaaagtaatctcagaaata
gtgaagcttctgaattccaagttctcggtgcttacaagacatgtttttcaagttgttgaa
gcattttttgaaacatcgagagttgaagttactgttccagagacagagaaaattgtagat
tcgcttgtatcgtatgtgtcttcgggagataagaaccctgtggacactgatatttctgca
gcaacattgttaaaacgtgctctggatatacttcatgataaagaatcaagcttgtggatt
aggaatcttcctctagtttgtggctgtttagcaggtcttctaagttcagaggctagcatt
gcttcattggcttcaagtattttgaaagagttgctcagccatcttgcggattataaaact
ctcttgactgataaagataaaccatctgatgatgaaggtcaggagagcatggaagcaagt
gcaataaaatcagtttgtcttatctttgagaatgcccttgccacttatagtggaactcca
gatgagcatattttgggggtcataactgttttgtttctcaatcttggagaaatctcatat
gtctttatgaagagtatagtgcttaaacttgcggacttgatgatccttgccaatgggggc
acatccaacactgaccatcttcggaaatgtattgggtctgctgtaattgctatgggacca
gagcggatacttacacttttacctatctccctacatgcggacttgacttgtttgaacatt
tggttgatacctattttaaaagattatgttgttgaagcatcactagggtactatattgag
aatgttgtgccccttgctaaatcatttgagcgggctagtcgtaaagttaaaaagttagca
accagtcaagatcttcaggctcatgcccatgacctgtggggattgctacctagtttttgt
tgccatcctactgatacttaccagaatgttggagctttggctgaaatattaattactttt
ctaaaggaggactcctttatgcataaaaatattgctattgccttacaggttcttgtctat
cagaacaagaatgttcttagccctaaaacagaatctgcagaacccaattcctttgcagaa
aaagattgtgtgttacagttcagaaatgtacccacttactcaaagaagattgcaaccaaa
aacatcaaggccttggcatcatgttccacagagttgctccaggctctaacaaacttattt
gttgattcacttcctgagaagcgctcgtatctaaaggatgccattggatgcctggcttct
attactgattcttctataactaaaatgattctcctgtcattatttgagaggtttcagttc
gtagatggtgagggtgaatttgaaaagttggggagtgataaccaagcaatgattgataaa
gaacaaggcaatctaagtagtacagagaaagagattcagaggtgtgtgataatggagcta
gcatcttcttttgttgaaggagccaaggaggatcttattgatctaatctataaatttatt
acacacacttttgaggtaactaataagtctggccattgtgaagcataccacaccttgagc
agaattctggaggaacatgcgtggttttcttcttcccgatttgttgagctgattgatttg
ttacttggtcttaagtctcctgttgatattgcctctcttaggagtcgctttgctagtctc
catatattaatgattcatgcattgaagatgaggttggaggaggagaacacaaaggctttt
cttattctcaatgagattatactcacattaaaggagggaaacgaagaattcaggaaagct
gcttatgatattctccttaagataagtgccagcttgaaagactcatcagctatttctcat
gcaccttatcacaaactgattggcatgataatgggctatctttctggttcatctcctcat
ataaagagtggggctgtgtctgccctgtcagtattggtttatcaggatgcagatatctgt
ctttcaatgcctgatattgtcccctcacttttatctttgctgcataccaaagtggtggaa
gttataaaagctgttttgggcttcgtgaaagtactagtgtcatgcttacaagccaaagac
ctacacaggcttctgtctgatgttgtctatgaagttttaccatggtcatctgtctccaga
catcattttagatcaaaggtcattgtcataatggagataataatacggaagtgtggttct
gcagtcgttgagtcagttactccagagaaatataagagttttctgaagaccgtttttgag
aaccgccatggcaaaacgagttccaaagaatctgatgctggtgatacagaaatgatgctt
gcagattcatctatgaaggcttctggatccatgctggagaagaggaaacacaaagcaatg
agttctatacctgaggagaatggttcagtagaacaaaggaaaagaaagagagagaagaaa
aacaatgcctatgcctgcatccctagttcaaatgaacatcacccgtcatctggtagtggt
ggtggtttaagagcagttcaaagtgctaggctatctcataatgcaaaatcaatgaagggt
cagtcagaaggaagacaaaagaagagcaagaggaatcacgaccaaattatgaaaaatcat
gaaaagagaaaggagccaactaacacaagcaagaaagatgaagcaactcatatacctaat
gcttccaaattaagcagacacaaggttgggaggaaaagacagaagatcaataaatga
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