Quercus lobata (valley oak): 115952844
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Entry
115952844 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115952844
KO
K06100
symplekin
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115952844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115952844
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115952844
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115952844
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115952844
U7-dependent histone pre-mRNA processing factors
115952844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
PSMD12-CSN4_N
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
115952844
NCBI-ProteinID:
XP_030926034
UniProt:
A0A7N2M4R3
LinkDB
All DBs
Position
7:19809801..19825148
Genome browser
AA seq
1341 aa
AA seq
DB search
MMTMNPRENLASLINSAKSASDIPSKLEPLRQLKRDLIQQHDLALVSESLSLLSDRFGPV
RKFVTEMIGEIGLKHFEFLPEIVPVLITVLSDATPAVARQAITCGIELFRSILQKVAIQG
LYSSELDSSLKSSWSWVLTLKENIYSVAFQTGSGGTRLLALKFVEAVILLYTPDPNGSSE
PPPLDGKFAKFNIYWLRGGHPILNVGDLSIEASQRLGLLLDQLRFPTVKSLSNSMIVVLI
NSLSTIAKQRPAFYGRILPVLLGLDPSSSVVNGMRVSAAKHALKNAFLTCLKCTHPGAAP
WRDRLIGALRDMEAGGLTDQTIPEVCKINGSLGEGKEDSPVIKEEKPTIKSCDVVDVNLG
SKRPGVPDSSDLAEDENVPGKRVRPTPSASEELTRESDKNNMMSHDDISSIGPTTSRGDG
DNGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRHLPPNHSKGDGGE
ELLLNMTIVGSDSKAKYPPSFIADVLSLSSTFPPIASLLNAHRSESNDIVQKPCDEKEDV
VAEADSVLACDGLDHGSENALLPTDLPASSVVSSGVEKGCFPISSDIHDVGDLESEIPGL
DSSAHADGLSETHVTSSMASTDLEEASQDQVTSLGQSTLKLLPSMSTEKSEELSPKAAVT
DVSSLVSSTATSAGLSCNFVLPKMSAPVVYLDDEQKDYLQKMAFIRIVEAYRQVAVAGGS
QVRFSLLAYLGVEFPSELDPWKLLQKHILEDYMGHEGHELTLRVLYRLYGEQAEDRDFFS
STTAASEYENFLLTVAETLRDSFPPSDKSLSRLLDEAPDLPKSVLKLLEDMCSPGNCDKA
EDLQSGDRVTQGLSAVWRLIMLRPSIRDVCLKVALQSAVHHLEEVRMKAIRLVANKLYPI
SSIAKQIEDFAKETLLSVISGDATERMDTEGSVTEMQKDSYLEKPVDEHPSVSVNSKDIS
SDTHQSSTCQSVSSLSVSEVQRCMSLYFALCTKKHSLFRQIFIIYKSTSKTVKQAVHRQI
PILVRTMGSSSDLLEIISDPPSGSKNLLMQVLHTLTDGTIPSSELLFTIRKLYDSKLKDI
EILIPVLPFLPKDEVKLIFPNVVNLPLDKFQSALARLLQGSSHSGPVLTPAEVLIAIHGI
DPDKDEIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFP
ALVEFIMEILSRLVSKEIWKYPKLWVGFLKCALLTKPQSFGVLLKLPPAQLESALTRTAA
LKAPLIAHASQPNIRSSLPRSVLVVLGLAPESQTSNPAQTGVAPDSQNSSQVQTSQAQTG
DTGNSDKEVLTEKSKESSGAS
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgaacccgagagaaaacctcgcgagtctaataaactcggcaaaatcagcc
tcggatataccttcgaagctcgagccattgcgtcaattgaagcgcgatttgattcaacaa
cacgaccttgccttggtctccgagtccctctctcttctctccgaccggttcggtccggtt
cgcaagttcgtcaccgagatgattggtgaaattggattgaagcattttgaattcttaccg
gagattgtaccggtgttgattacggttttgagtgatgctacgccggctgttgctcgacaa
gccatcacttgtggtatcgaattgtttcgttcgattcttcaaaaagttgcaattcagggc
ctatactcaagtgagttggacagttcactgaagtcatcatggtcatgggtgttaacactc
aaggaaaatatatactcagtagcttttcagacaggaagtggtgggacgaggttgctggca
ttgaagtttgttgaggcagtcattcttctttacacacctgatcctaatggctcttcagag
ccccctcctcttgacggaaagtttgcaaaattcaacatttattggcttcgtggtggtcat
ccaatacttaatgttggagatttgtcaattgaggccagtcaacgtttgggtttattgctt
gatcaactcaggtttccaacagtgaaatctcttagcaactcaatgatcgtagtgcttatc
aatagcctttcaacaatcgcaaagcaaaggcctgcattttatggaaggattctgcctgtt
ttacttggtttggatccctcaagctctgtagtcaatggaatgcgtgtttccgcagcaaag
catgccctaaaaaatgccttcctcacctgcttgaaatgtacacacccgggtgctgcaccg
tggcgggatcggttgattggtgccttgagggatatggaagctggagggttgactgaccaa
actattccagaagtgtgcaagattaatggaagcctaggggaagggaaagaagattcacca
gttattaaggaagagaaacccacaattaaatcatgtgatgttgtggatgttaatttgggg
agcaaaagacctggagtaccagacagcagtgatctggctgaagatgaaaatgtgcctgga
aagcgtgtcagaccaacacctagtgcctcagaggaattgactagagagtcggataagaat
aacatgatgtctcatgatgacatttcttcaattggaccaaccacttccagaggagatggt
gataatggacccgtgcagcaacttgtagctatgtttggcgccttggttgcacaaggtgaa
aaagctgttggttctttagagattcttatctcaagcatctctgctgacttgttagcagag
gtagtgatggctaatatgcgacaccttcctcccaatcattccaaaggtgatggaggtgaa
gagttgctgctaaacatgaccatagttggtagtgattctaaagctaaatatcctccatca
tttatagcagatgttctatcactttctagtactttcccaccaatagcttcactgttaaat
gctcaccggtcagagtccaatgatatagtgcagaaaccttgtgatgagaaagaagatgtt
gtggctgaagctgatagtgttcttgcatgtgatggcttggaccatggatcggaaaatgca
ttgttgcccactgatttaccagcttcctctgttgtttcatctggagtggagaaaggctgc
tttcctatttcatctgatattcatgatgtgggggatctagagagtgagatacctggcctg
gattcttctgctcatgctgatggattgtcagagacgcatgttacatcctccatggcctcc
actgacttagaagaagccagtcaagatcaagttacaagtttgggtcagtcaacactgaag
ttacttccatctatgtcaacagagaagtctgaggagctcagcccaaaagcagctgttaca
gatgtcagcagcctggtctcatcaacagcaacttctgctggattgtcttgtaattttgtc
ttgcccaagatgtcagcgcctgttgtttaccttgatgatgaacagaaggattatttgcaa
aaaatggctttcattcgtattgttgaggcatataggcaagttgcagtcgctggaggttca
caagttcgcttttcactgcttgcatatttaggggttgagtttccctcagagttagaccca
tggaagcttttacaaaagcatatcttggaagattatatgggtcatgagggacacgagttg
accttgcgtgtcctctacaggttatatggcgagcaagcagaagatcgcgacttcttttct
tctacaactgcagcttctgaatatgaaaacttccttcttactgtggcagaaacgcttaga
gattcttttccaccttcagacaaatcattaagtagattgcttgatgaagctcctgatctg
cccaagtcagttttaaaattgttagaggacatgtgttctcctggaaactgtgataaagct
gaggatttacagagtggggatcgagtaactcaaggtctaagtgctgtgtggagattgatt
atgctgaggccttctattcgagatgtctgcttgaaagttgccttacagagcgcggttcat
catttggaggaagtgcgtatgaaggcaatacgactggtggcaaacaagctttatccaata
tcatccattgctaaacaaattgaagatttcgcaaaagaaacattgctctctgtaataagt
ggtgatgcaacagaaagaatggatactgaaggatcagtcactgaaatgcagaaggattct
tatctagaaaaacctgtggatgaacatccctcagtgagtgtgaacagtaaagatatttct
tctgatactcatcaatcgagcacatgtcagagtgtgtcctccctttcagtctccgaggtc
cagcggtgcatgtcactgtattttgccttatgtaccaagaagcactcccttttccgccaa
atatttattatatataaaagcacatcaaagacagttaaacaggcagttcatcgccagatc
ccaatactcgtccgtactatgggctcgtcgtcggatcttcttgaaatcatttcagatcct
ccaagtggaagcaagaacctcctaatgcaggttttgcatacactgacggatgggacgatt
ccctcttcagaactactttttaccattaggaagttatatgattccaaactaaaggatata
gagattcttattccagtattaccattcctaccaaaggatgaggttaagctgatatttccc
aatgttgtgaatcttccactggataagttccaatcagcacttgctcgcttactacagggt
tcatctcattctggtccagtgctcactccagctgaagttttgattgctatccatgggatt
gatcctgacaaagatgaaatccccttgaagaaggtcacagatgcatgcaatgcatgtttt
gagcagaggcaaatattcacccaacaagtacttgcgaaggttttgaatcaattggttgag
cagattcctctccctttattgttcatgcggacagtattacaagctataggtgctttccca
gcgctggtggaatttataatggagatcctatctcgtcttgtcagcaaggagatttggaaa
tatccaaagttgtgggtaggattcttgaagtgtgcactcttgacaaagcctcagtcattt
ggtgtattgcttaagttacctccagcacagctagaaagcgcattgaccagaactgcagct
ctgaaagcacctctgattgctcatgctagccaaccaaacatccgatcttcacttccaagg
tctgtgttggtggttctgggacttgcacctgaatctcagacttcaaatccggcacaaact
ggagtagccccagattctcagaattcaagtcaggttcaaacaagtcaggctcagactgga
gatacaggcaactcagataaggaggtgctgacagagaaatctaaagaatcatctggtgct
agctga
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