Quercus lobata (valley oak): 115952848
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Entry
115952848 CDS
T07350
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115952848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115952848
03009 Ribosome biogenesis [BR:
qlo03009
]
115952848
04131 Membrane trafficking [BR:
qlo04131
]
115952848
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
qlo04147
]
115952848
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
115952848
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
115952848
Membrane trafficking [BR:
qlo04131
]
SNARE
SNARE associated proteins
Others
115952848
Autophagy
Aggrephagy
Other aggrephagy associated proteins
115952848
Exosome [BR:
qlo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
115952848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
AAA_2
CDC48_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
AAA_17
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
Vps4_C
NB-ARC
TsaE
AAA_24
AAA_lid_PRS2_C
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
115952848
NCBI-ProteinID:
XP_030926038
UniProt:
A0A7N2M7K3
LinkDB
All DBs
Position
7:43682930..43687839
Genome browser
AA seq
806 aa
AA seq
DB search
MASQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVALHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNCSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAD
NTTSGATASDPFATAAAGADEDDLYN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccaacccgaatcctcggactctaagggaacgaagagggactttagcacagcg
attcttgagcgcaagaaggccccgaatcggcttgttgtggatgaggcaatcaacgatgac
aactctgtcgttgcgcttcatcccgataccatggagaagctccaactcttccggggagac
acgatcttgatcaaggggaagaaaaggaaagatactatctgcattgcccttgctgatgac
acttgtgatgagccaaagataaggatgaacaaggttgtaagaagcaacctccgggtgagg
cttggagatgttgtttctgtgcaccagtgtgcagatgtcaaatatggaaagcgtgtccat
attcttcctgtggatgatactattgaaggggtcactggcaatctctttgatgcatacttg
aaaccttatttcctggaggcataccgcccagtgaggaagggtgattttttccttgtgaga
ggggggatgagaagtgtagagtttaaggttattgagactgaccctccagagtactgtgtg
gttgctccagacactgagatcttctgtgagggagaacctgtgagaagggaggacgaggat
agattagatgaagttggttatgatgatgttggtggtgttagaaagcagatggctcagatt
cgtgaattagtggagctgcccctgaggcatccacagctatttaaatcgattggtgtgaag
ccaccaaaaggaattctattgtatggaccccctggatctgggaaaactctaattgcccgg
gctgttgccaatgaaactggtgccttctttttctgtatcaatggacccgaaatcatgtca
aaattggctggggaaagtgagagcaacctcaggaaagcatttgaggaagcagagaagaat
gcaccatccatcatctttattgatgagatcgattcaattgctcccaagagagagaagaca
catggagaagttgagaggagaattgtttcccagctcttgacacttatggatggactgaaa
tctcgtgctcatgttattgtcatgggggctacaaatcgtcccaacagcattgaccctgcc
ttgagaaggtttggaagatttgacagggaaatagatattggagttccagatgaaattggg
cgtcttgaagttctccgtattcacacaaagaatatgaagctttctgaagatgttgaccta
gaaagaattgctaaggacacacatggttatgttggtgctgatctagcagctctgtgtact
gaggctgctcttcaatgcatcagagagaagatggatgtgatcgatttggaagatgagaca
atagatgcggagatactaaattcaatggcagtttcaaatgagcacttccagactgctctt
ggaacaagcaacccatctgctctccgtgaaactgttgttgaagtgcccaattgcagttgg
gaagatattggaggtcttgagaatgttaagagggaacttcaagagactgttcaatacccg
gtggagcatcctgagaaatttgagaagtttggaatgtcaccatcaaagggtgttcttttc
tatggccctcctggatgtgggaaaaccctcctggccaaagctattgctaatgaatgtcag
gcaaactttatcagtgtcaagggtcctgagttgcttacgatgtggtttggagagagtgaa
gccaatgtaagggaaatattcgacaaggcacgccagtctgctccttgtgtcctattcttt
gatgaacttgactcaattgctactcagagaggtagcagtgtaggagatgctggaggtgct
gctgatagggttttgaaccaactcttgactgaaatggatggcatgtctgcaaagaaaact
gttttcatcattggggccaccaacagaccagatatcatagaccctgcacttctgcgtcca
ggtcgtcttgatcaattgatctacatccctctccctgacgaggactcccgccatcagata
tttaaggcatgcttgaggaaatctcctatctccaaagacgttgatctcagagcccttgcc
aagtatactcaaggctttagcggtgctgacattactgagatatgccagcgtgcatgcaaa
tatgccataagagagaacattgagaaagatattgagagggaaagaaggagaagggataat
cctgaggcaatggaggaggatgttgaggatgaagtagcagagatcaaggcagcccatttt
gaggaatcaatgaagtatgctcggaggagtgttagcgatgctgacatccgcaaataccag
gcatttgctcaaacattgcagcagtcaagagggtttggatccgaatttaggtttgctgat
aatactacttctggagccactgcatctgaccctttcgcgacggctgctgccggggctgat
gaagatgacctatacaattag
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