Quercus lobata (valley oak): 115953126
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Entry
115953126 CDS
T07350
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115953126
03036 Chromosome and associated proteins [BR:
qlo03036
]
115953126
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115953126
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115953126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
115953126
NCBI-ProteinID:
XP_030926495
LinkDB
All DBs
Position
7:13792914..13834484
Genome browser
AA seq
1656 aa
AA seq
DB search
MGKNVVSDEEDEVEVEDEDEREHVDRRGGGRDEDEEDEEDEEGQDEYEKDGFIVDDVDEE
EQDEEERADSDEERQRKKKRKKKENYTLDEDDYELLEDNNITIPRWKQSKKFKRLKKAQG
VSEEPSGLSDEEEMFGSGKGGRTAEEKLKRSLFGDDEVGAPLEDIAEEEEQAEDEEDGDI
GEEDEMADFIVDEEDEHGAPPKGGRRPKKGGNRRAPGVSSSALQEAHEIFGDVDELLQLR
KQGLDSTEWRERRLEDEFEPIVLSEKYMTEKDDQIKELDIPERMQISEESTGSPPLDDSI
VEETAWIYNQLQSGTVPLFGKRGMGTVKEGGDLSIKKDDIMRFLDLLHVQKLDIPFIAMY
RKEECLSLLKDPEQPEDDDENQDKNEKTPTLKWHKVLWAIQDLDRKWLLLQKRKSALQSY
YNKRFEEESRRVYDVTRLNLNQQLFDSIMKSLKAAGSEREVDDVDSKFNLHFPSGEVGVD
EGQYKRPKRKSLYSICSKAGLWEVANKFGYSSEQFGLQLSLEKMRNDELEDPKETPEEMA
SNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSNFMDHAVVSTCPTPDGNLAIDS
FHQFAGVKWLREKPLSAFDDAQWLLIQKAEEERLLQVTVKMPERDLEKLINEFNEYYLSD
GVSKSAQLWNEQRKLILQDALFGFLMPSMEKEARSLLTSRAKNWLLMEYGNVLWNKVSVG
PYQRKETDINSDEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVND
QQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEIIFKMVEENPRDVGHEMDG
LSIVYGDESLPRLYENSRISSDQLPSQSGIVKRAVALGRYLQNPLAMIATLCGPGREILS
WKLSSLENFLNPDEKYGMIEQVLVDVTNQVGVDINLAISHEWLFAPLQFISGLGPRKAAS
LQRSLVRAGAIFTRKDFVTVHGLGKKVFVNSVGFLRVRRSGLAASSSQFIDLLDDTRIHP
ESYNLAQELAKDVYDEDIRGDTNDDDDALEMAIEHVRDRPSILRSLDVDEYANGKNRANK
RETFYDIKRELMQGFQDWRKQYEEPSQDDEFYMISGETEETLAEGRIVQATVRRVQGQKA
ICVLESGLTGMLMKEDYSDDWREAELSDRLHEGDILTCKIKSIQKNRYQVFLVSKESEMR
SNRLQYVRNADPYYHEDRSRLQSEQDKARKEKELAKKHFKPRMIVHPRFQNITLDEAKEF
LSDKDPGESIISPSRHGPSHLTLTLKVYDGVYAQKDIVEGGKEHKDITSLLRIGKSLKIG
EDTFEDLDEVMDRYVDPLVSHLKAMLSYRKFRKGTKAEVDELLRIEKSENPTRIVYCFGI
SHEHPGTFILTYVRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQSAQSL
RSIAARVPMRSPATGGSSGASGGSGWGGSTDEDNWRGQSYDRDRSSTPGSRTGRNDYRNG
GGRDGHPSGLPRPYGGRGRGRGSYNSSRGNSSGNERQDSGYDAPKWDSTTKDGEDGWGSF
PGAKVQNSPGREAFPGGWGGSGSGSGSGSGGGNSWGGGASGNENAGWGDAGTNDGGTDNG
GSGWGTAPKRSSSQSQAGNGWSGGSGGGGGGGGGGW
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaacgtagtctctgatgaagaagatgaggtcgaggtcgaggacgaggacgag
agggaacacgttgatcgtcgtggaggtggtcgcgatgaggatgaagaggacgaagaagat
gaagaagggcaggatgaatatgagaaggatggatttatagtggatgatgttgatgaagag
gagcaagatgaagaagagagggcagacagtgatgaggagaggcagaggaagaagaaacgg
aagaaaaaagagaattatacacttgatgaagatgactatgagctcttggaggacaacaat
ataaccattccccgttggaagcagagcaaaaagtttaagcggctgaaaaaagctcagggg
gtttctgaggagccctctggattatctgatgaggaggagatgtttggaagtggaaaaggt
gggagaactgcagaggagaagcttaagcgtagtttatttggtgatgatgaagtaggtgct
ccgcttgaggacattgctgaagaggaggaacaagcagaagatgaagaggatggagacatt
ggtgaggaggatgaaatggctgactttattgtggacgaagaagatgagcacggagctcct
cccaagggagggaggcggccaaagaaaggagggaataggagggcgcctggagtttcctca
tcagctttgcaggaagctcatgaaatattcggtgatgttgatgaactcctgcagctccgt
aagcaaggtttagattctactgaatggagggaaaggaggctggaagatgaatttgaacca
attgttctttctgagaagtatatgacagagaaggatgaccagattaaggagcttgacatc
ccagaaagaatgcagatatctgaggagagcactggttctcctccattggatgatagtata
gttgaagagactgcttggatatataatcaactccaaagtggtacggtacctttgtttggc
aagagaggcatggggactgttaaggaagggggggatctgtctattaagaaagatgatatc
atgagatttttggacctactgcatgtgcaaaaactagatatcccctttattgctatgtat
cgaaaggaggagtgcctaagtctcctgaaagatcctgaacagccggaagatgatgatgaa
aatcaggataagaatgagaagacacctactctaaagtggcacaaggtactttgggcaatt
caagacttggatagaaagtggctgctgcttcagaagcgaaagagtgctcttcagtcatac
tacaataagagatttgaggaagaatctcggcgtgtatatgatgtaacaagactcaattta
aatcagcaactctttgactcaattatgaagtcactcaaggcagcaggatcagaaagggag
gttgatgatgttgactccaagtttaacttacatttcccttcgggtgaagtgggagtggat
gagggacaatacaagaggcccaagaggaaatcactatacagtatttgcagtaaagctggt
ctatgggaggttgcaaacaagtttggttacagctctgagcaatttggattgcagctatca
ttagaaaagatgagaaatgatgagttggaggatcctaaggaaacacctgaggagatggct
tctaactttacatgtgcaatgtttgagacacctcaagctgtgcttaaaggagctaggcac
atggcagctgtggagataagttgtgagccatgtgttaggaaacatgtccgtagcaacttt
atggatcatgctgtggtatcaacttgtccaacacctgatgggaatttggcaatagattct
ttccatcagtttgcaggggtgaagtggttgcgcgagaagcctcttagtgcatttgatgat
gcacaatggctcctcattcagaaggctgaagaggaaaggcttcttcaggttacggttaag
atgccagaaagggatctggagaagttaataaatgaatttaatgagtattatcttagtgat
ggtgttagtaaatctgctcaactatggaatgagcagaggaaattaatattgcaggatgca
ctttttgggtttcttatgccctccatggagaaagaagcaagatctttgttgaccagtaga
gcgaaaaactggttacttatggagtatgggaatgttttgtggaacaaagtttccgtgggc
ccatatcaacggaaggaaactgatattaactcagatgaagaagctgcaccaagggtcatg
gcttgttgttggggccctggaaagccagctactacctttgtaatgttagattcatcaggt
gaggtgctggatgtgctttacactgggtccctcactttgcggtcccaaaatgtgaatgac
caacaacgtaagaaaaatgatcaagaacgtgtattgaagttcatgacagatcaccaacca
catgttgttgttttaggagctgtaaatctctcttgtacccgattgaaggaggatatatat
gagattattttcaagatggtggaggaaaatcccagagatgtcgggcatgagatggatggg
ttaagcattgtatatggggatgagagtctacctcgcctttatgagaactctcggatttca
tctgaccagctaccttcgcaatcaggcattgttaaacgggctgtcgctctcgggcgatat
ttgcaaaatcctttggcaatgattgcgacgctatgtggaccgggaagggagatcttatca
tggaaacttagttccctagagaactttttaaacccagatgagaaatatggaatgattgaa
caggttttggtagacgtaacaaaccaagtgggtgttgacattaatttggctatcagtcat
gaatggttgtttgctcctctacagttcatttctgggcttggtcctaggaaggcagcatct
ctgcagaggtccttggtaagagctggggcaatatttactcgaaaggactttgtcacagtg
catggacttggtaaaaaggtgtttgtcaattcggttggtttcttgcgtgtccggcggagt
ggattggctgctagcagcagccagttcattgatttgctagatgatacaagaatacatcca
gaatcttataatcttgcacaagagttggccaaagacgtttatgacgaggacataagaggt
gatacaaatgatgatgatgatgcactggagatggcaatagagcatgttagagatcgacct
agtattttgagaagccttgatgttgatgaatatgctaatggcaagaaccgtgcgaataaa
agggaaactttttatgacataaaaagggaacttatgcagggatttcaggattggcgtaag
caatatgaagagcctagtcaagatgatgaattctatatgatttcaggtgaaactgaggag
acccttgctgagggaagaattgtgcaagccactgtccgtagggtgcaaggtcaaaaagca
atttgtgtgcttgaatctggtttgactgggatgctcatgaaagaagactattcagatgac
tggagggaggctgagttgtctgacaggctacatgaaggtgacattctcacttgcaagatt
aagtcaattcaaaagaataggtaccaggtcttcctagtttctaaagagagtgagatgcga
agtaaccgacttcagtatgtcagaaacgccgatccatactaccatgaagaccgaagcagg
ctacaaagtgagcaagacaaagctcgcaaagaaaaggagcttgcaaagaagcattttaag
ccaaggatgattgttcatccccgcttccagaatattaccttagatgaagcaaaggagttc
ttgtctgacaaggatcctggcgaaagtatcatcagtcccagtcgccatggaccttctcat
ctaactctaactctcaaagtttatgatggagtttatgctcaaaaggacatagttgaaggt
ggaaaggagcacaaggacatcacaagcttacttcgtattgggaagtcattgaaaattggg
gaggacacttttgaggatttggatgaggtgatggatagatatgttgatcccttggtgtct
cacttgaaagcaatgctaagttatcgaaagttcaggaagggcacaaaagcagaagttgat
gaactcctaaggattgagaaatcagaaaatcctacgaggatagtttattgttttggcatc
tcacatgagcatcctggcaccttcatcctgacctatgtaaggagtacaaatccacaccat
gagtatattggtttatatccaaagggatttaaattccggaaaaggatgtttgaggacatt
gatcggcttgtagcatacttccagagacatattgatgatcctcagtcagcacaatctctc
agatcgatcgctgctagggtgccaatgcgaagccctgcaactgggggctcttcaggggca
tctgggggtagtggctggggtggttcaaccgatgaggataattggaggggtcaatcttat
gacagggatcgatcttctacacctggttcaagaacaggccgaaatgattatagaaatgga
ggtggccgagatggacatccaagtggattgcctaggccatatggtgggcgcggacgtggt
cgaggttcgtataacagcagcagaggaaatagttccggcaatgagaggcaagattctggt
tatgatgcccccaaatgggattcaactaccaaggatggagaagatggttggggcagtttt
cctggtgctaaagttcaaaactcaccaggcagggaggctttcccaggtggttggggtggc
agtggcagtggcagtggcagtggcagtggcggcggtaatagttggggtggtggagctagt
ggcaatgaaaatgctgggtggggggatgcaggtacaaatgacggtggtactgataatggg
ggttccggttggggaactgcacctaagagaagttcttctcagtcccaagctgggaatgga
tggtcgggaggaagtgggggcgggggcgggggtgggggtggtggttggtga
DBGET
integrated database retrieval system
