KEGG   Quercus lobata (valley oak): 115953186
Entry
115953186         CDS       T07350                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115953186
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:qlo03041]
    115953186
Spliceosome [BR:qlo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    115953186
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_EIPR1 PRP4 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SCAP WD_LRWD1 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_SPT8 WD40_like
Other DBs
NCBI-GeneID: 115953186
NCBI-ProteinID: XP_030926578
UniProt: A0A7N2M375
LinkDB
Position
7:complement(5220980..5227647)
AA seq 579 aa
MEVDEENPASTSPTEASDLGPDSQTLVSSVHATPLQPIQPLVPPVVVPPTAPIVPPIAPI
PSILPPPVIRPLAPLPVRPPVLRPPILQNGEVRESDSDSDNEDTGPTRTAPGTTGEYEIS
EESRLVRERQEKAIQELMMKRRAKALAVPTNDMAVRTRLRKLGEPMTLFGEREMERRERL
RMIMAKLDAEGQLEKLMKAHEEEEAAAAAAKADVEEEIIQYPFYTEGTKTLKDARVDIAR
YSLVQAALRIRREQRKRDDPDEDMDAELDWALGQAANLVLDCSEIGDDRPLSGCSFSRDG
EKLATCSLSGVTKLWKMPNVEKESTLKGHTERATDVAFSPVHDHLATASADRTARLWDTR
GSLLRTFEGHLDRLARISFHPSGKYLGTTSFDKTWRLWDVENGEELLLQEGHSRSVYGLD
FHRDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCR
VWDLRKRKTLYTIPAHSNLISAVKFEPQEGYFLVTASYDMTAKIWSARDFKPVKTLAGHE
AKVTSLDVAGDGRYIATVSHDRKIKLWSSSSKEKAMDVD
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggaggtggatgaggaaaacccggcatcaacttctcctacagaggcatctgatttgggt
cctgatagtcaaacattggtttccagtgttcatgctactccacttcagccaatccaacct
ttagttccacccgttgttgtgcctcctactgctcctattgttcctcctattgctccaatt
ccttcaattcttcctcccccggttattcgcccattggcacctctcccagtccgccctcct
gttttaaggcctcccattttgcaaaatggtgaggtgagagagagtgactcggattcagac
aatgaagatacaggtccaacccgtactgctccaggtacaactggggaatatgagatatct
gaggagagcagactggtgagagagcggcaggaaaaagcaatacaggagctcatgatgaag
cgtcgtgctaaggctcttgctgtgcctactaatgacatggctgtccggactcgtcttcgc
aagcttggtgaacctatgactctttttggagaaagagagatggaaagacgtgagaggctg
cggatgattatggcaaaactggatgctgaagggcagttggagaaactgatgaaagctcat
gaggaggaagaggctgcagctgctgctgcaaaagcagatgttgaggaagaaattattcaa
tatcccttttatacagaagggacgaagactcttaaggatgccagagttgatattgcaagg
tactctcttgtgcaggcagctttgcgtattagacgtgagcagaggaaaagggatgatcca
gatgaagatatggatgcagagttggattgggctctggggcaggcagcgaatttggtgctt
gattgcagtgagattggggatgaccggccactctctggttgttctttctcacgagatgga
gaaaagctggctacctgttctttaagtggcgttactaagttgtggaaaatgcctaatgtt
gaaaaggaatctacactgaagggacacacagagcgtgctactgatgtcgcattttctcct
gtgcatgaccatctagctactgcctctgctgaccgtactgcaaggttgtgggacactaga
ggatctttgttgaggacatttgagggccatctggaccgcctcgcacgcatttccttccat
ccttcagggaagtacttgggcactactagctttgacaagacttggagattatgggatgta
gaaaatggggaggagttgcttcttcaggaaggtcacagtaggagtgtctatgggctagac
ttccaccgtgatggatcactagctgcatcttgtggactggatgcacttgctcgtgtttgg
gaccttcgaactggtagaagtattcttgccttggagggccatgtcaagccagttttggga
atcagcttctctcccaatggatatcatttagccaccgggggtgaagacaatacctgtcga
gtctgggatctaagaaagagaaaaactttgtatacgataccagcacattctaacctcatt
tcagcagtaaagtttgagcctcaggaaggatatttcttggtaactgcttcctatgacatg
acagctaagatttggtctgcccgagattttaagcctgtgaagacacttgctggacatgaa
gcaaaagtcacgtccttagatgttgcaggagatgggcgttatatagcaactgtatcacac
gatcggaaaattaagctttggtccagcagtagcaaggagaaggctatggatgtggactag

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