KEGG   Quercus lobata (valley oak): 115953565
Entry
115953565         CDS       T07350                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03030  DNA replication
qlo03410  Base excision repair
qlo03420  Nucleotide excision repair
qlo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115953565
   03410 Base excision repair
    115953565
   03420 Nucleotide excision repair
    115953565
   03430 Mismatch repair
    115953565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:qlo03032]
    115953565
   03036 Chromosome and associated proteins [BR:qlo03036]
    115953565
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115953565
DNA replication proteins [BR:qlo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    115953565
  DNA Replication Termination Factors
   ELG1-RFC complex
    115953565
Chromosome and associated proteins [BR:qlo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    115953565
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     115953565
  Check point factors
   HRAD17(Rad24)-RFC complex
    115953565
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Sigma54_activ_2 Rad17 RuvB_N Mg_chelatase AAA_5 AAA_22 DUF815 ABC_tran AAA_23 AAA_11 nSTAND3 AAA_24 AAA_29 AAA_16 AAA_2 TsaE SprT-like
Other DBs
NCBI-GeneID: 115953565
NCBI-ProteinID: XP_030927157
UniProt: A0A7N2M3K4
LinkDB
Position
7:complement(18990170..18999638)
AA seq 354 aa
MLWVDKYRPKTLDNITAHQHIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQMFG
PTAEKVKVENKTWKVDAGSRTLDIELTTLSSTNHVELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR
CLNVRINAPTEEEIVKVLELIGKKEGLQLPSGFAALIAEKSNRSLRRAILSFETCRVQQY
PFTSKQVISSMDWEEYVAELASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagacaagtacagacccaaaaccctagacaacatcaccgcccatcaacac
atagcccaaaacctcaagaaactcgtgacggagcaggattgcccacatttgctcttctat
ggcccaccgggttccggcaagaaaaccctaatcatggcccttcttcgacagatgtttggc
cccactgctgaaaaggtgaaagtcgaaaataagacatggaaagtcgatgctggaagtcga
actcttgatatagagcttaccacattgtcaagcaccaaccatgtggaattgaatcccagt
gatgcagggtttcaggacagatatattgttcaagaaataattaaagaaatggctaaaaat
agacccattgacaccaaaggaaaaaaaggatttaaagtattagtgctcaatgaggtggac
aaactttcaagagaagcccagcattctctccgaagaactatggagaaatatagtgcttat
tgccgtctaatactgtgctgcaacagttcttcaaaggttactgaagcaatccggtctcgc
tgcttgaatgtgcgaataaatgcaccaacagaagaagagattgttaaggtattggaactc
attgggaagaaggaaggactacaacttccatctggatttgctgctcttatagcagaaaag
tcaaatcggagtttaaggagagctatactgtcatttgagacttgtcgtgtccaacagtat
ccctttacaagcaaacaagtaatatcctcaatggattgggaggaatatgttgctgaacta
gcatctgacataatgaaggagcagagtcctaaaaggctgtttcaggttcgagggaagttg
tatgagctacttgtcaattgtattcctccagagattatcttgaagaggctgctttatgaa
ttattaaagaaattggatgctgaactaaaacatgaggtttgccattgggctgcatattat
gagcataggatgcgtctaggacagaaagctatatttcacattgaagcatttgtggccaag
ttcatgagcatttacaagtcttttctcattgcgacttttggctga

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