Quercus lobata (valley oak): 115954023
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Entry
115954023 CDS
T07350
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115954023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115954023
03041 Spliceosome [BR:
qlo03041
]
115954023
03036 Chromosome and associated proteins [BR:
qlo03036
]
115954023
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115954023
Spliceosome [BR:
qlo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
115954023
Complex B
115954023
Complex C
U2 SnRNP specific factors
115954023
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
115954023
TFTC complex
115954023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
115954023
NCBI-ProteinID:
XP_030927735
LinkDB
All DBs
Position
7:complement(25546184..25563974)
Genome browser
AA seq
1382 aa
AA seq
DB search
MAVSEEECSSVKSRSSSSASSSATTTHYLAKCVLRGSVVLQVLYGHIRSPTFLDVVFAKE
TSIELVIIAEDGIVQSVCEQPVFGTIKDIAILPWNEKFNAAQSPQMRGKDLLIVISDSGK
LSFLTFCNEMHRFFPVTHVQLSNPGNSRHQPGRMLSVDSSGCFIAASAYEDRLALFSVST
TDGSEIINEKLIYPPENEGDASIAKSVHKNSIRGTIWSMCFITQDSSQLSKEHNPVLAIL
LHRRGTVLNVLLLLEWNIRESAIHVISQFEEAGPLAHDIVEVPHSRGYAFLFRVGDALLM
DLRDVHNPSCVYRTSLNFLPNAVDEHAFVEESCRVHDVDDEGLFNVAACALLELRDYDPM
CIDGDNSNVTSTCKHACSWSWEPENHKNPRMIFCIDTGELFMIEIFFDSDGLKVNLSECL
YKGLSCKALLWVQGGYLAALVEMGDGMVLTLSNGRLHYTSPIQNIAPILDMSVVDSHDEK
HDQMFACCGVAPEGSLRVIRSGISVEKLLRTAPIYQGMTGTWTVRMKVNNPYHSFLVLSF
VEETRVLSVGLSFSDVTELVGFQPDVCTLACGLVSDGLLVQIHQNAVRLCLPTNVAHFDG
IPLSSPVCTSWFPDNTSISLGAVGHNMIVVSTSNPCFLLVLGVRLLSAYHYEIYEMQRLR
LQNEISCISVPQKPFEQKQPSSFIHMVNNSAFPLGINGGRTFVIGTHRPSVEILSFIPDK
GLRVLASGMISLTNTIGTAISGCIPQDVRLILVDRLYILSGLRNGMLLRFEWPDPSKMSS
SEFPRLQPISSLVNIGTALTGIRVPASFSPQFSEANIFEKTNDLPINLQLIAIRRIGITP
VFLVPLSDSLDADLIALSDRPWLLHTARHGLSYTSISFQPSTHVTPVCSIECPKGILFVA
ENSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTQLSNDVCSSDICCVDPL
SGLVLSSFKLEPRETAKSMELVRVGNEQVLVVGTSLSSGPAIMPNGEAESTKGRLIVLCL
EHVQNSDSGSITFCSKAGSTSQRTSPFREIVGYATEQLSSSSLCSSPDDTSCDGVKLEET
ESWQLRLAYSTTWPGMVLAICTYLDRYFLASAGNYFYVCGFTSDNPQRMKRFAVGRTRFM
ITSLTSYFTRIAVGDCRDGILFYSYHEDSKKLEQLYCDPSQRLVADCILMDVDTAVVSDR
KGSIAVLSCSDHLENNASPECNLTLSSAYYMGEIAMSIRKGSYSYKLPADDVLNAIDLSQ
NTIIASTLLGSITIFIPISREEHELLEAVQARLVVHPLTSPVLGNDHDDFRSRENPVGVP
KILDGDMLTQFLELTSKQQEAILLLPLGSPDTVKSSLKPHLPSPIPVNQVVQLLERVHYA
LN
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcagaggaagagtgttcttccgtcaagtcccgatcgtcttcatcggcctct
agcagcgccaccaccactcactacctcgcaaagtgcgtcctcagaggaagcgtcgttctt
caggtcctctacggtcacatccgctccccaacttttctcgatgtcgttttcgccaaggag
acatccatagagttggtaataattgctgaagatggaattgtacaatctgtatgtgagcag
cctgtatttggcacgattaaagatattgccatcctaccctggaatgagaagtttaatgcg
gcacaaagcccacagatgcggggtaaagaccttttgattgttatttctgattcggggaag
ctctcatttctcacattttgcaatgaaatgcacaggtttttcccagtgacacatgttcaa
ctttctaatcctggaaactcaaggcatcagcctggaagaatgctatctgttgattccagt
ggctgtttcattgctgctagtgcatatgaagatcgcttggctttgttttctgtttcaaca
actgatggcagcgaaattatcaatgagaaactgatttatcctcctgagaatgaaggggat
gcaagtattgccaaaagtgtccataaaaacagtatacgtggcactatatggagcatgtgc
tttattacacaagattccagtcaactgagtaaggagcataatcctgtactagccattctt
ctacataggcggggaacagtcttgaatgtactgctgttgttggagtggaatattagagaa
tctgctatacatgttatttctcagtttgaagaagctggacccctagcacatgatattgtt
gaagttcctcactctcgtggatatgcctttttgttcagggttggtgatgctctcttaatg
gatcttagagatgttcacaatccttcttgtgtctatcgaacaagcttaaattttttacct
aatgcagtggatgagcatgcttttgttgaagaatcatgtagagtacacgatgttgatgat
gaaggtttatttaatgttgctgcttgtgctttgctcgagttgagggattatgatcctatg
tgtatagatggtgacaatagcaatgtgacttcaacctgcaaacatgcgtgctcatggagt
tgggaaccagaaaatcataaaaatccaaggatgattttctgtatagataccggagaactt
ttcatgattgaaatattttttgattctgatggcctcaaagttaatctatcagaatgtctc
tataaaggtctatcatgcaaggcacttttgtgggttcaaggcggatatctggctgcgctt
gtggagatgggggatgggatggtcctgacactttcgaatggaagactgcattacacaagt
cctattcaaaacattgcaccaatattagatatgtcagttgtggattcccatgatgagaaa
catgatcaaatgtttgcttgctgtggagtagcaccagagggatcgttaagggttatacgt
agtggtattagtgtagaaaaactcttgaggactgctcctatttatcaaggcatgactggt
acttggacagttcgaatgaaagtaaacaatccttatcattccttccttgtgctatcattt
gttgaggagacccgggtactatcggttggattaagtttttctgatgtgactgaattagtt
ggtttccagcctgatgtctgtactttggcatgtggccttgtaagtgatggtttgcttgtc
cagattcaccaaaatgcagttaggctttgtttacccaccaatgttgctcattttgatggt
atccctttgtcctctccggtttgcacatcttggtttccagataatacaagtattagtttg
ggggcagttggacataatatgatagttgtttcgacctctaatccttgttttttattggta
cttggggtcagattgctatcagcttatcattatgaaatatatgaaatgcagcgtttgaga
ttgcaaaatgaaatatcatgcatttctgtacctcaaaagccttttgagcaaaaacaacca
agttctttcatccatatggtaaataatagtgcctttccattgggaatcaacggcggtaga
acctttgttattgggacgcataggccttcagtggaaatattgtcttttatacctgataaa
ggtctaagagttcttgcttctgggatgatttcattaacaaataccataggaactgctata
agtggctgcattcctcaagatgtaaggctcatactggttgataggctttatatactatct
ggtttgaggaatggaatgctgcttcgatttgaatggcctgatccctccaaaatgtcttca
tcagaatttcctagattacaacctattagttctttagtaaatataggtactgctttaaca
ggtattagagtgccagcttcttttagcccacagtttagtgaagcaaatatatttgagaag
acaaatgaccttccaataaatcttcaattgattgccattcgtcgcattggcattacacct
gtattcttggttcccctgagtgattcacttgatgcagatttaattgctcttagtgacaga
ccttggttgttgcatactgcaagacacggcctctcttatacatctatctcatttcaaccg
tcgacacatgtgacccctgtatgttctattgaatgtcctaaaggaatcttattcgttgcg
gagaacagtttacatctggtggagatggtgcacagtaagaggcttaacgtgcagaaattt
catcttgggggcaccccacgaaaggtcctatatcatagtgaaagcagactattgcttgta
atgagaactcaattgagcaatgatgtgtgttcatccgatatatgttgcgtagatcctttg
agtggtttagtgctatcatcttttaaacttgaacctagagaaacagccaaatccatggaa
ttagtgagggttggaaatgaacaggtcctggtggtcgggactagtctgtcttctggtcca
gccataatgcccaatggtgaagctgagagtaccaaaggccgtcttattgtcctctgtcta
gaacatgtgcaaaattcagatagtggatccataacattctgttcaaaggcagggtcaact
tctcaacgaacttcaccatttcgtgaaattgttggatatgccacagaacagctatcaagc
agtagtctctgtagcagcccagatgatactagctgtgatggagtcaaacttgaagagact
gagtcatggcaattgcgattagcttattcaaccacatggcctggaatggtccttgcaata
tgtacttatcttgatcgttacttcttggcatctgctggtaattatttttacgtatgtggc
tttacaagtgacaatcctcaaaggatgaaaaggtttgctgtaggaaggacacgctttatg
ataacgtctttgacgtcatattttactagaattgctgttggtgattgccgtgatggtatt
cttttctattcttaccatgaggattcgaaaaaactggagcaactttactgtgacccatca
caaagattagttgctgactgtattcttatggatgttgacacggctgttgtttcagatcgt
aaggggagcattgcggttctgtcatgttcagatcatttagaaaataatgcaagtccagaa
tgcaacttaacactgagctctgcctattatatgggtgagatagccatgagcatcaggaag
ggatcatattcatataaacttccagctgatgatgtgctgaatgctattgacctgtcacaa
aacactatcattgccagtacactattaggaagcattacaatatttattcctatatcaagg
gaggaacatgagctcttagaagctgtccaagctagacttgtggttcatccactgacttct
cctgttttaggaaatgatcatgatgatttccgtagccgtgaaaatccggttggggttcct
aaaatactggatggtgacatgctgactcagttcctggagcttacaagcaagcagcaagag
gccatattgttgttacctcttggttcacctgacacagtaaaatcaagcttgaaaccacat
ttaccttcacctatcccagtcaatcaggtggtgcaactccttgaacgagttcattatgcc
ttgaattga
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