Quercus lobata (valley oak): 115954450
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Entry
115954450 CDS
T07350
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115954450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115954450
Enzymes [BR:
qlo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115954450
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115954450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
115954450
NCBI-ProteinID:
XP_030928162
UniProt:
A0A7N2M811
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Position
8:3978196..3984169
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AA seq
720 aa
AA seq
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MKKLYPITLSRALSRALSSSSSSTSSSAQSTAFPLKHVTKGNFESALAELRRHVAAADFV
AIDLEMSGVTSAPWRESFEFDRSDVRYLKVKDSAEKFAVVQFGVCPFRWDSSKLSFIAHP
HNFYVFPRQEVLIDGPSYEFLWQTTSIEFLAKYQFDFNACIREGISYLSRGQEKEALRRL
SMAYEDELSDTWCNMKEVRDIPINRMADVLFAERIKNRFSEWRDGLLQDRHGGSQLQWNS
NDSKQQFQTVFFKMRPTFNLTGFTSHQFRLIQLVINKHFKDLSYVRVNGDDLCSQQLVVY
TESKDDRDLLMKEVKDENRRVAEMKIQAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHVYS
KFIGPLPSAAEEFVSSVNKYFPHIVDTKILLNANLVLQQRMKKSSTTLSSAFALLCPQIA
ISSKSTGLTFQQCVQVEVQVDDKRSSNWNSGAKHEAGYDAFMTGCIFVQACSYLGIDFKH
HSPSENLAHNEKLCKHVNHLYLSWINGDIIDLSTGNKVAELFGTNDFKKKYPNILFENIV
LIWGFPSKLKAREITESICKVFGLTSVTSVYHLDETAVFVQFSKPEFVSYFLLLKENLEK
SDGPISVLHPLAKLLEGGNTHAGNYETYKEICSSPISKVLFANQAEAVGIKWKREAVEPK
IAVESKEPTSFWEENAVNNSTKSSEKSKQGKVHNAKKGFGSSPFPFETESVHFMVRSDLK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagctctatcccattactctctcacgtgcgctctcacgtgccctatcttcatct
tcatcttcaacctcaagctcagcccaatcgactgcgtttcctctgaagcacgtgacgaag
gggaacttcgagtcggctctagcggagctccggcgccacgtggcggcggcggacttcgtc
gccattgacttggagatgagcggcgtcaccagcgccccctggcgcgagtccttcgagttc
gatcgctccgacgtccgctacctcaaagttaaggactccgccgagaagttcgccgtcgtt
caattcggcgtctgtccctttcgctgggactcttccaagctctccttcatcgctcacccg
cacaatttctatgtctttccgcgtcaagaggttctgatcgatggcccctcttacgagttt
ctttggcagacaacatcaattgaattcttagccaaatatcagtttgatttcaatgcctgc
atacgagaaggaatatcttatttatccagaggacaagaaaaggaagcattaagacgtttg
agtatggcatatgaggatgagttatcagatacatggtgcaacatgaaagaagtcagagac
attccaataaaccgcatggctgacgttttgtttgctgaacgaatcaagaataggttcagt
gaatggcgtgatggattattacaggatagacatggagggtcccaacttcagtggaactca
aatgactcaaagcaacaatttcaaactgttttctttaaaatgcgtccaacttttaatctg
accggctttacttctcatcagtttaggttaattcaattggtcattaacaagcacttcaaa
gatctttcttatgtgcgtgtgaatggtgatgatttatgttcacaacaactagtagtgtat
acagaatcgaaggatgacagggatttgcttatgaaggaggtgaaagatgagaatcgcaga
gtagcagagatgaaaatccaagctgcaattgggtttcgccatgttattgacctgctttca
tcggagcagaagttgattgttggtcacaattgcttcctggatattgcacatgtatacagc
aaattcataggtcctcttccgtcggctgctgaagaatttgtctcctctgttaacaagtac
tttccacatattgttgacaccaaaatacttttgaatgccaatcttgtactccaacaacgg
atgaagaagtccagcacaacactatcctcagcatttgctttgttgtgtccacaaattgct
attagttctaaaagcacggggcttacttttcagcaatgtgtgcaagtggaggttcaagtg
gatgataagaggtcctccaactggaactctggagccaagcacgaagctgggtatgatgct
tttatgacaggatgtatctttgtgcaggcctgcagttatctaggcattgattttaaacac
cattcgccctctgaaaatttagctcacaatgaaaagctctgtaagcacgtcaaccatcta
tatctcagttggattaatggagacatcattgatttaagtactggtaataaggttgcagag
ttgtttggaactaatgacttcaaaaagaaatacccaaatattttgtttgagaacattgtt
ttaatctggggattcccatccaaactcaaggcaagggagataacggaatccatctgtaaa
gtcttcggcctgacctctgtaacctctgtttaccacttagatgaaactgcagtgtttgtt
cagttcagcaagccagaatttgtctcttattttctgcttctaaaggaaaatttagagaaa
agtgatggtccaatctcagttttgcaccctcttgcaaaacttttggaaggtggaaacact
catgctgggaattatgaaacttataaagagatttgcagctccccaatttcgaaagtcttg
tttgccaatcaggcagaggcagttggtattaaatggaagagggaagcggtggaacccaag
atagcagtggagagcaaagaacctacgagtttctgggaagaaaatgcggtaaacaattct
actaaatcttctgaaaagtcaaagcaagggaaggtacacaacgcaaaaaaaggatttgga
tcctctccatttccctttgaaacggagagtgtccatttcatggtcaggagtgatttgaaa
taa
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