Quercus lobata (valley oak): 115954774
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Entry
115954774 CDS
T07350
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115954774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115954774
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115954774
mRNA degradation factors
5'-3' decay
Decapping complex
115954774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
115954774
NCBI-ProteinID:
XP_030928565
UniProt:
A0A7N2M7Q5
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Position
8:complement(1525669..1536662)
Genome browser
AA seq
1398 aa
AA seq
DB search
MASSANPNPHQHQQQQPITPFDMQTFFNSIPQSQTPTSPFPPPYSFPPQSSPFHHQQQQQ
PQQPQQQQQQHMPYHHHHPQFLQNQNAPLLHSQRSLSYPTPPLQPPITISTSASSPSPNP
NSGGARLMALLGNIPSPPSNHDPPPQPQPPQHHTPPPSPTPPMMGITLPPPPLHTAGSGP
IRMPSSKIPKGRHLVGEHVVYDVDVRLQGESPPQQLEVTPITKYQSDPQLVVGRQIAVNK
AYICYGLRQGNIRVLNINTALRSLLRGHTQRVTDMAFFAEDVHLLASVGVDGRVYVWRIS
EGPDEEDKPQITGKAVVAVQFIGEEGAAHPRVCWHCHKQEILVVGIGRRIMRIDTTKVGK
GEVYSAEEPLKCPVDKVIDGVQLVGNHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRK
FAPLVVLRPYEGQPVCSATFLTAPHRPDHIILITAGPLNREVKIWSSASDEGYLLPSESE
WKCTQTLELKSSAEPRVEEAFFNQVVALSQAGILLLANAKKNAIYAVHLDYGPNPAATCM
DYMKESTVTMPILSFTGTSDILSHGEHIIQVYCVQTQAIQQYALDLAQCLPPPLENMGLE
KSDSNVSREATSVEGFVTLDPSGSKPTEMLSFAGSVPKPTIQVSSPETATAVRYTVSSGS
AEAATSKEINSLSTESKAVALAPVTSDVDSVYVASPPLPLTPRLPRELSGYRSPTSSFEP
PSLSMPVGDQPVNDYSVDRQVDTIHANMSDVSSLDDDSSVLNPRIIFKQPTHLVTPSELK
GNSSTGTTSVLDGKSEGEASIQDVIVNSDASNAEVEVKVVGETRSMQNAEFGPQGDSQNL
LSENKEKYFCSQASDLGFEMARECSAISAETYIVEEARQVGVNEIEALAQPSTADEDEVQ
DSTKDFSVKVSESSTSTTVPLLSTPNTKGKKQKGKSSQASGPSSPSPSVFNSIDSTIETS
GNASLPSTEAAFSQILSMQEMLNQLMAMQKETQKQMTTMISVPVSKECKKLETNLGRSME
KAVKANTDALWARLQEENAKNEKLLRDRTQQVTNLMNNFMKDMPVMLEKAVKKEMAAVGP
AVVRSITPAIEKTISSAIAESFQRGAGDKAINQLEKSVNAKLEATVARQIQAQFQTSGKQ
ALQDSLKSSFETSVIPAFEMSSKTMFEQIDATFQKGMVEHTNAARQHLESTHSPLALALR
DAINSASTVTQTLGGELLEGQRKLLSLAAAGANPSAVNPLVSQLSNGPLGALHEKVEVPD
PTKELSRLVSEHKYEEAFTAALQRSDVSIVSWLCSQVDLRGILSMGPLPLSQGVLLSLLQ
QLACDISNDTTRKLGWMTDVANAIIPADPMIAVHVRPIFDQVYKILNHQRSLPTVTGAEL
SSIRLLMHVINSMLMTCK
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctgctaatccaaacccccatcaacaccaacagcaacaacccatcacacct
tttgacatgcaaaccttcttcaattccattccccaatctcaaaccccaacatctcctttc
cctcctccctactccttccctccccaatcctcaccgtttcaccatcaacaacaacaacaa
ccccaacaaccccaacagcaacagcaacaacacatgccttatcatcaccaccaccctcaa
tttctccaaaaccaaaacgcccctttactacactcccagcgctctctctcctacccaact
cctcctctccaacccccaatcaccatctccacttccgcctcctccccttctccaaacccc
aactccggcggcgcccgtctcatggccttgttgggcaacatcccttcccctccctccaat
cacgaccccccgccgcagccgcagccgcctcagcaccacactcctcctccttctcctact
cctcccatgatgggtatcactctgccgccaccgccacttcacactgccgggtccggcccc
atccggatgcccagcagtaagattccgaagggccggcatttggtgggcgaacacgtggtg
tatgacgtcgacgttaggctccaaggggagtccccgccgcagcagttggaagttacgccc
attaccaagtatcagtcggatcctcagctcgtagtggggcggcagattgcggtgaataag
gcgtatatttgttatggattgaggcaggggaatatccgggttcttaacattaataccgcc
ttgcggtctttgcttcgaggacacactcagagggtcacagacatggctttctttgctgag
gatgttcaccttttggctagtgttggcgtagatggacgagtttatgtgtggaggatttct
gaaggtccagatgaagaagataagcctcaaataacaggaaaagcggttgttgccgttcaa
tttataggagaggagggagctgcgcatccacgagtttgttggcactgccacaaacaagag
attttggtagttgggattggaagacgtattatgagaattgatactacaaaagttgggaag
ggtgaagtgtattcggcagaggaacctctcaaatgtcctgttgataaggtcattgatggg
gtccaattagttggtaatcatgatggagaagtaactgacctatcgatgtgccaatggatg
acaacccgtttagtttctgcttctgttgatggcacgataaagatctgggaagatcgcaag
tttgcaccgctcgtagtattaagaccatatgaaggccagcctgtttgttcggcgactttt
ttaactgctccccatcggccagatcacatcatacttatcacagcgggcccacttaatcga
gaagtgaaaatttggtcctcagcaagcgatgaaggctatttactgccgagtgaatctgaa
tggaagtgtacacagacattggaattgaagagttcagctgaacctcgagttgaggaggca
ttcttcaatcaagttgtggcattgtctcaagcaggcattctcttgcttgcaaatgctaag
aagaatgcgatatatgctgtacacttggactatggtcctaatccagcagcaacgtgcatg
gattacatgaaagagtctacggtcactatgccaattttgagttttaccgggacaagtgat
atattatctcatggtgaacatattattcaggtttattgtgtccagacacaggctattcag
caatatgctttggacttagcccagtgcttgccaccaccactggagaacatggggttagaa
aaatcagattcaaatgtttcacgtgaggcaactagtgttgaaggatttgtgactttggac
ccatctggaagtaaacctactgagatgctgtcatttgctggttcagtacccaaaccaact
atacaagtaagtagccctgagactgcaactgcagtgaggtatactgtaagctctggttca
gctgaggcagccacttcaaaagaaattaacagtttaagtactgaatctaaagctgttgca
ctggcacccgtaactagtgatgttgatagtgtttatgttgcatcaccacctcttcctttg
actcctaggttgcctagagagctctctggttataggagtccaacaagtagcttcgagcca
ccttcactcagtatgcctgttggagatcaaccggttaatgattattcagttgacaggcaa
gtggacaccattcatgcaaacatgtctgatgtgtcttcgttggatgatgattctagtgtg
cttaatcctcgtatcattttcaaacaaccaactcacctggtaactccctctgaattgaaa
ggaaattcatccactggaactactagtgttcttgatggcaagagtgagggtgaggcaagt
atccaggacgtgattgtcaacagtgatgccagtaatgctgaagtggaggtgaaagtagtt
ggtgaaacaagatctatgcagaatgctgaatttggcccccaaggagattctcaaaatctt
ttgtcagaaaataaggaaaaatacttttgctcccaggcttcagatcttggttttgagatg
gcccgagaatgctctgctatatcagcagaaacttatattgtagaggaagctcggcaagtt
ggtgttaatgaaatagaggcactggcccaaccttctactgctgatgaggatgaagtccaa
gactccacaaaggatttctccgtgaaggtttctgagtcatctacatccacaacagtacca
ctgttgtccacacctaatacaaaagggaaaaagcagaagggaaaaagttctcaagcatca
ggtccatcttccccatctcctagtgttttcaattcaatagattctacaatcgaaacaagc
gggaatgcaagtctcccctctacagaagctgctttttctcaaattttgtccatgcaggag
atgctcaatcagctcatggcaatgcaaaaagaaacgcagaagcagatgacaacaatgata
tccgttccagttagcaaagaatgtaaaaaactcgagacaaatctagggcggagtatggag
aaagctgtcaaggccaatactgatgctttgtgggctcgtctccaggaagagaatgcaaaa
aatgagaagttattacgagaccgaacacagcaagttacaaatttaatgaataactttatg
aaagacatgccagttatgttagaaaaagcagtgaagaaggaaatggctgcagtaggacca
gctgtagttcgctcaatcactccagctattgagaaaacaatatcttcagctattgcagag
tcttttcagagaggagcgggtgataaggccatcaatcaattggagaaatctgttaatgca
aaacttgaagctactgttgctaggcaaatccaagcacagtttcaaacttccggcaaacag
gctcttcaggattctttaaaatcaagttttgaaacgtcagttatccctgcctttgagatg
tcatctaaaaccatgtttgagcaaatagatgctacatttcagaaaggaatggtggaacat
acaaatgcagcccgacagcacttggaatctacccattctccattggcacttgctcttagg
gatgcgattaattcagcatcaacagttactcaaactttaggtggagaattgctcgagggt
cagagaaagcttctatctcttgcagctgcaggagcaaacccaagtgcagtaaatcccttg
gtctcccagctgagcaatggacctttgggtgctctccatgagaaggttgaggtgcctgat
ccaacaaaggagctatcaagattggtatctgagcacaaatatgaggaggccttcactgct
gccctacaaagaagtgatgtgtctattgtatcctggttatgttctcaggttgatctacgt
gggatcttgtcaatgggtcctctccctttgagccaaggagtactgctttcacttttacag
cagttagcctgtgatatcagtaatgatacaacccgaaaacttggttggatgacagacgtt
gctaatgcaataataccagcagacccaatgattgcagtgcatgtgcggcccatctttgat
caagtctacaagatactgaaccatcaacgtagcttgcctacagttaccggcgctgagctc
tcaagtatccgtcttctcatgcatgtcatcaactcaatgctgatgacctgtaaatga
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integrated database retrieval system
