Quercus lobata (valley oak): 115955312
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Entry
115955312 CDS
T07350
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115955312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115955312
03036 Chromosome and associated proteins [BR:
qlo03036
]
115955312
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115955312
Coactivators
SAGA/TFTC/STAGA complex
115955312
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115955312
STAGA complex
115955312
TFTC complex
115955312
SAGA complex
115955312
SLIK complex
115955312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
115955312
NCBI-ProteinID:
XP_030929260
UniProt:
A0A7N2MBZ5
LinkDB
All DBs
Position
8:29798690..29809781
Genome browser
AA seq
542 aa
AA seq
DB search
MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAVKCMRHSKRTTLTAED
VDGALNLRNVEPIYGFASGGPLRFKRAIGHRDLFYIDDKDVDLKDVIEAPLPKAPLDAAV
LCHWLAIEGIQPAIPENASVEVITAPSNVKDYEQKDDGLPVDIKLPVKHILSRELQLYFD
KITELTMSRSDSVLFKQALVSLATDSGLHPLVPYFTYFIADEVSRGLSDYSLLFALMRVV
RSLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGNRFADDHWELRDFTANLVASICKRFGHV
YNNLQTRLTKTLLNAFLDPKRSLTQQYGAIQGLAALGPNVVRILILPNLEPYMRLLEPEM
LLEKQKNEMKRNEAWRVYGALLHAAGQCIYDLLKMFPPLTSLPAHAVWRSNARVTTTVPN
KRKESMEHLEEQPPHKKTATDGPIIPVFTNSSPSHMEGISVVPVPGDSNMGPSSSSGQTP
NEIVDGRGKRNKGDKQALKKSALLNQIWKNDLDSGHLLVSLLELFGEGILSFIPAPEMSL
FL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtattgtgcccaaggagaccattgaggtcattgcacaaagcattgggattaacaac
ttgtctccagatgttgcacttgctcttgctcccgatgtggaatatagaatgcgtgagatc
atgcaggaggccgtcaaatgcatgcgtcactctaagagaacaacattgacagcagaggat
gttgatggtgcacttaacttgagaaacgttgagccaatatatggctttgcctctgggggt
cctctacggttcaaaagagctattggacatagggatttgttttacatagatgacaaggat
gtggatcttaaagatgtgattgaggctcctttaccaaaagcacctcttgatgctgccgtt
ctttgtcactggctagccattgaaggcatacaacctgctattccagaaaatgcttctgtg
gaagtaattacagctccttctaatgtcaaagattatgaacaaaaggatgatggacttcct
gttgatattaaattaccagttaagcacatattgtctagggagcttcagctttactttgac
aaaatcactgagctaaccatgagtaggtctgattcggtcctttttaaacaagcattagtg
agtttggcaacagactcaggacttcatccattagttccgtatttcacatactttatagct
gatgaggtatctcgtggtttaagtgattattcccttctgtttgctttgatgcgtgttgta
cggagtcttcttcaaaatcctcatattcacatagagccttatctacaccaattgatgcct
tctgtggtaacatgccttgttgcaaaaaggttgggaaataggtttgcagatgaccactgg
gaacttagagacttcacagctaatctggttgcttcaatatgcaaaagatttgggcatgtg
tataacaatctccagacacgtctgacaaaaactttgctcaatgcatttttggacccaaaa
cggtcattgactcaacagtatggtgcaattcaaggcttagcagccttaggacccaatgtg
gttcgcattcttatacttccaaatcttgagccatatatgcgacttcttgaaccagagatg
cttcttgagaagcaaaagaatgagatgaagaggaatgaagcttggcgtgtttatggagcc
ctgctgcatgcagcaggtcaatgtatatatgatctgctcaagatgtttccacctctgaca
tccctgccagcacatgcagtatggaggtccaatgcaagagttactaccacagtgccaaat
aagcgcaaggagagcatggagcacttggaagagcagccaccccacaagaaaacagcaact
gatggtccaattattccagtttttaccaattcctctccatctcacatggaagggatatct
gtggttccagttcctggtgattctaacatgggtccatcctcatcctctggacagacacct
aatgagatagttgatggcaggggtaagagaaacaaaggtgataaacaagctctgaagaag
tcagctctcctcaatcagatatggaaaaatgacttggattctgggcatctcctggtatcg
ttgcttgagctgtttggtgaaggtattttatccttcattccagctcccgagatgtctttg
ttcttgtga
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