Quercus lobata (valley oak): 115955419
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Entry
115955419 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115955419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115955419
03012 Translation factors [BR:
qlo03012
]
115955419
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115955419
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115955419
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115955419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
HA2_N
Ank_5
ATPase
AAA_22
nSTAND3
Ank_2
AAA_25
AAA_7
AAA_19
Rad17
ABC_tran
T2SSE
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
115955419
NCBI-ProteinID:
XP_030929402
UniProt:
A0A7N2MDV5
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All DBs
Position
8:complement(45477858..45494440)
Genome browser
AA seq
1229 aa
AA seq
DB search
MARNKKKKLWKRDNVDVSKLNIAESTTIHITQQLQKFFESKAEVYKFEDNLSSDERAAVH
ELCRKMGMTSKSKGHGGQRRVSVFKPKKQVATRKGPSSLTHLTFSEGAKVVLHDLFTQYP
PDDEEVDKEKVGKKTERVDKMRRSKVDIFLKPSMSKAEIAKKVESLASKIERAANLKQVT
EGRSKLPIASFRDVITSTIESHQVVLISGETGCGKTTQVPQYLLDNMWGKGEACKIVCTQ
PRRISATSVAERICYERGGNIGDDVGYKIRLESKGGRNSSIVFCTNGILLRVLISEGAGR
LKTEGGAKPAKREISGITHIIVDEIHERDRYSDFMLAILRDFLPSCPHLRLILMSATIDA
ERFSQYFGGCPIIRVPGFTYPVNIFYLEDVLLLLKSVENNNPDNTLAVVPSEDPELTEEE
KLALDEALNLAWSSDEFDPLLELVSSEGTQKVFNYQHSLTGLSPLMVFAGKGRVADVCML
LSFGADCHLQAKDGSTALELAERENQQEATVIIKKHMESSISNSIEEQQILDKYLGKMNP
ELIDVVLIEQLIRRICTDSQEGAILVFLPGWEDINKTREKLNASAFFKDTSKFMVLCLHS
MIPSVEQKKVFKRPPPGCRKIVLATNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL
QSSWVSKASAKQREGRAGRCQPGICYHLYSKLRADSLPEFQLPEIKRIPIEELCLQVKLL
DPNCKIEDFLNKTLDPPVFEAVRNAILVLQDIGALSVGEKLTELGEKLGSLPVHPLTSKM
LFFAIMMNCLDPALTLACASDYRDPFTLPMLLIDKKRADAAKSELASLYGGTSDQLAVIA
AFECWNNAKQRGQEERFCSEYFISKSTMSMLSGMRKQLQNELIRNGLIPDDVSRCSLNAR
DPGVLHAVLVAGLYPMVGRLRPPHKNAKRFVETSGGDKVRLHPHSTNFKLSFSKTNHCPL
IMYDEVTRGDGGMIIRNSTVVGPLPLLLLATEIAVAPANNDDEDEEDEDDDSDGDESDED
GMDIDKKSVGRHEEKIMSSPDNSVTVIVDRWLFFGSTALDIAQIYCLRERLLAAILFKVT
HPRTDLPPVLAASMHALARILSYDGLSGVSFPLESVDSLTSMVNATEIDKYSPGKKKEMV
QNPNGFLRSLTTQGTPKRFPCHHHNTRVPASKGPTNLGALSSHNVRPPLNSAGMKFAPQG
SRLNGDGLATQSHGPRGDSLKRQRENGTG
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggccaggaacaagaagaagaaactgtggaaacgcgataacgtggatgtttcaaagctt
aacattgctgaatccacaacgattcacattacccaacaacttcagaagttctttgaatcc
aaggcggaagtttacaagtttgaagataacctgtcgagcgatgaacgtgcggcggtgcat
gaattatgcaggaaaatgggtatgacgtccaagagtaaagggcatgggggccagcgtcgt
gtatctgttttcaaacctaaaaagcaggttgccaccaggaaagggcccagcagtctaact
catttgacattttcggaaggggcgaaagtggttttacatgatttgtttactcaataccca
cctgatgatgaagaggtggacaaggaaaaggttgggaagaaaactgaaagagttgataaa
atgcgacggagtaaagttgatattttcctcaagccttcaatgagcaaggcagaaattgcg
aagaaagtggagtcacttgcttccaaaattgagagggctgcaaatttgaaacaggtaact
gaaggcaggtctaagcttccaattgcatcctttagggatgtcattacatcaacaattgaa
tctcaccaggtagttctcatatctggtgagactgggtgtggaaagaccacgcaggtccct
caatatcttctagataatatgtggggtaagggtgaggcctgtaaaattgtgtgtactcaa
cctcgacgtatctcagcgacatcagttgctgagagaatctgttatgaaagaggagggaat
attggtgatgatgttggatacaagatacgattggaaagcaaaggtgggaggaactcatca
attgtgttctgcacaaatgggattttattgagggtgctaatttctgaaggggctggtagg
ttgaaaacagaaggcggagcgaaacctgcaaagcgagagatttctggcattactcacatt
atcgtggatgaaattcatgaaagggatcgctactctgattttatgttggcaattctcaga
gactttcttccttcctgtcctcatctgcgtttgatacttatgagtgctactattgatgct
gaacgattttcgcaatattttggtggctgcccaatcatccgtgtccctgggttcacttat
cctgttaacattttttatttggaggatgtacttttgctcctgaaatcagtggaaaataat
aatcctgataatactttagccgttgtccctagtgaggacccagagttgacagaggaagaa
aagcttgctttagatgaagccctgaatctggcttggtcaagtgatgagtttgatccactc
ttggagctggtttcttctgagggtacccaaaaggtgttcaattaccagcattctttgact
gggctatcaccattgatggtatttgctggaaagggtagagtggctgatgtttgcatgctc
ctatctttcggggcagattgtcatttacaggccaaggatggatctactgcattggagttg
gctgaacgagaaaaccaacaggaagccactgtaataattaaaaaacacatggaaagttcc
atttccaactccatcgaagaacaacaaatacttgataagtatctaggcaaaatgaatcct
gaacttattgatgttgttcttatagagcagttgatacggagaatatgtactgattcacaa
gaaggagcaatccttgttttccttccaggatgggaggatataaataaaacccgggagaaa
ctgaatgcatctgcatttttcaaagatacttccaagtttatggtattatgtctccattct
atgattccttctgtggagcaaaagaaagtttttaaacgtccacctcctggttgccggaaa
attgttcttgcaaccaatattgctgaaactgccattaccattgatgatgttgtgtatgtt
atagacagtggtcgtatgaaggagaaaagttatgatccttataataatgtatcaaccctt
caatcttcttgggtctcaaaagcaagtgcaaagcaaagagaaggacgtgcgggccgctgt
cagcctggaatttgttatcatctctattcaaagctccgagcagattctttgccagaattt
caacttcctgaaattaagagaatcccaattgaggaactatgtctgcaggtgaaactactc
gatccaaattgcaagatagaagatttcttgaacaagacattagatcctccagttttcgag
gccgtacgaaatgcaattttagttcttcaagatattggggctttgtcagttggtgaaaag
cttactgaacttggggaaaagcttggttctctacctgtgcatccattgacgagcaagatg
cttttctttgctataatgatgaactgccttgacccagcattgactctggcatgtgcctct
gactatagagatccatttactcttcccatgttactgatagataagaagagagctgatgct
gctaaatctgagcttgcatcattgtatggtgggactagtgatcagctagcagtaatagca
gcatttgagtgctggaataatgcaaagcaaaggggccaagaggaacggttctgttctgaa
tactttatctctaaaagcactatgagtatgttgtctggtatgcgtaagcagctccaaaat
gaactaattcggaatgggcttattcctgatgatgtttcccgttgtagcttgaatgcgcgt
gacccaggtgtactccatgcagtccttgtggctggtttgtatcctatggtgggaagattg
cgtccacctcataaaaatgcaaaacgatttgtagagacttcaggtggtgataaagttcgt
ttgcacccccattccactaattttaagttgtcattcagcaaaaccaatcattgccctttg
attatgtatgatgaggtaactcggggagatggaggtatgatcataaggaacagtactgtg
gttgggccactcccattattattgcttgcaacagagattgctgttgctccagcaaataat
gacgatgaagatgaggaagatgaggatgatgacagtgatggagatgaaagtgatgaagat
ggaatggatattgataagaaatcagttggacgacatgaagaaaagatcatgtcatctcct
gataattcagtgacagtcattgttgatcggtggctcttttttgggtctacagcacttgac
attgctcaaatttactgcttgagagagcgattattagcagcaatcttattcaaagtaaca
catccaaggactgatcttcctcctgttcttgcggcctcaatgcatgctctagcccgtatt
ttatcttacgacgggctatctggagtgtcatttccattagaatctgtggattcactgact
tcaatggtaaatgctactgagatcgacaagtattccccagggaagaagaaagagatggta
cagaatccaaatgggttcctaaggtcacttacgactcaaggcacacccaagaggtttcct
tgccatcatcacaatactagggtacctgcatcaaagggaccaacaaatttgggtgctctg
tcaagtcacaatgttcggccgccacttaattcagctggcatgaaatttgcaccacagggc
tccagattaaatggggatggcttggctacgcagtcacatggtcctaggggagactccctt
aagcggcagcgtgaaaatgggactggataa
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