Quercus lobata (valley oak): 115955590
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Entry
115955590 CDS
T07350
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115955590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115955590
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115955590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
115955590
NCBI-ProteinID:
XP_030929637
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Position
8:28834679..28842859
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AA seq
477 aa
AA seq
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MQSDSGKLFIGGISWDTNEERLKEYFSSYGEVVEAVIMKDRTTGRARGFGFVVFADPTVA
DRVIKEKHNIDGRMVEAKKAVPRDDQNILSRSSGSIHGSPGPGRTRKIFVGGLASTVTES
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLIKSFHELNGKMVEVKR
AVPKELSPGPSRSPLGNYYGLNRVNNLLNGYPQGYTPTTVGGYGLRMDGRFSPVGGGRSG
GFPPFGSGYGMGVNFEPGLSPGFGGSANFSSNLSYGRGLNPYYGNSNRFTSPLAYDGGNG
GSTSFFSSMTRNLWGSGGLNYGTSSASSSAYLGSGSGSIGGSTFGNAGVNWGSLGISAQG
GSNNAPNNSGNFGYGGGEDSYGLGTGGYGRNSGTNTAPTSSYAASTGGFDGDFADFYNSG
SVYGDTTWRSSNAERDGSGPFGYGLGSAAPDVSAKTSPSYVGGYSVNKRQSNRGIAA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgatagtggcaagttatttattggtgggatatcttgggacacaaatgaagag
cgtctcaaggagtattttagttcatatggtgaggtggtagaagctgttattatgaaggat
cggaccacaggtcgtgctcgaggttttggctttgttgtttttgccgacccgactgttgcg
gatagagtcataaaggagaagcacaacatagatggaaggatggttgaggcaaaaaaggct
gttcctagggatgaccaaaacattttgagtagaagcagtggtagcatccatggctctcca
ggtcctggccgcactagaaagatatttgttggaggtttagcatccacagtcacagagagt
gacttcaagaagtattttgatcagtttggcacaatcactgatgttgtggtgatgtatgat
cacaacacccagaggcctagaggctttggatttatcacttatgattcagaggaagcagtg
gacaaggttttgatcaagagttttcatgaactaaatggtaaaatggttgaggtcaagcgt
gcagttcccaaagagttatcacctggtcccagtcgcagcccacttggtaactactatggt
ctgaatagggtcaataacttacttaatggctaccctcaaggatatactccaactacagtt
ggaggatatggacttaggatggatggtagattcagtccagttggtggtggccgaagtggt
ggttttcctccatttggttctggttatggaatgggtgtgaattttgagccagggttgagc
ccaggttttggggggagtgcaaattttagtagtaatctcagctatggacggggattgaac
ccttattatggtaattcaaataggtttactagtccacttgcatatgatggtggtaatgga
ggaagcacttcctttttcagctctatgactcggaatctgtgggggagtggggggcttaat
tatggcacaagctctgcaagttccagtgcatacctgggatcaggaagtgggagcattggg
ggaagcacatttggtaatgctggagtaaattggggttctttgggaatctctgctcaaggt
ggaagtaacaatgcccctaacaatagtggaaattttggttatggaggtggtgaggacagt
tatggcttgggaacgggagggtatggaagaaacagtggtaccaatacggccccaacatca
tcttatgctgcatcaacaggtggttttgatggggactttgcagacttctataatagtggt
tctgtatacggggacaccacttggcgatcatcaaatgctgaacgagatgggtctggtccc
tttggttatggacttggcagtgcagctcctgatgtttctgctaaaacttctcctagttat
gttggtggttatagtgttaataagagacagtcaaatagaggaattgctgcgtag
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