Quercus lobata (valley oak): 115955764
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Entry
115955764 CDS
T07350
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115955764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115955764
Membrane trafficking [BR:
qlo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115955764
Hops complex
115955764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf_RING_Vps8
zf-RING_Vps41
Nup54_57_C
zf_RING_Vps8_fungal
RPN1_RPN2_N
zf-RING_UBOX
zf-C3HC4
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
115955764
NCBI-ProteinID:
XP_030929945
UniProt:
A0A7N2R9B6
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All DBs
Position
8:37284643..37305696
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AA seq
988 aa
AA seq
DB search
MDQAGRQVFTVDLLERYAAKGRGVITCMAAGNDVILLGTSKGWVIRHDFGLGDSTEIDLS
TGRPGEQSIHRVFVDPGGSHCIATVVGSGGVDTFYTHAKWIKPRVLTKLKGLVVNAVAWN
RLLITEASTKEVILGTDNGQLHEIAVDEKDKREKYIKFLFQLGELPEAFMDLQMETASIM
NGTRYYVMAVTPTRLYSFTGIGSLETVFASYLDRAVHFMELPGEIPNSELHFYIKQRRAV
HFAWLSGAGIYHGGLNFGAHHGSPNGDENFVENKALLDYSKLSEGAEAVKPSSMAVSEFH
FLLLIGNKVKVVNRISENIIEELQFDLTSESVSRGIMGLCSDATAGLFYAYDQNSVYQVS
VNDEGRDMWKVYLDLNEYAGALANCRDPLQRDQVYLVQAEAAFASKDYHRAASFFAKINY
MLSFEEITLKFITIGEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLE
DDTAVVNHGSEYQSVIKEFCAFLGDCKDVLDEATTMRLLESYGRVEELVYFASLKEQYEI
VVHHYIQQGEAKKALEVLQKPAVPIDLQYKFAPDLIMLDAYETVESWMATNNLNPRKLIP
AMMRYSSEPHAKNETHEVIKYLEYCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQFK
FGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEA
DKVEDDEDLRKKLWLMVAKHVIEQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFA
LIDDFKEAICSSLEDYNKQIELLKQEMNDATHGADNIRNDISALAQRYAVIEREEECGAC
RRKILTMGREYQMARGYTSIGPMAPFYVFPCGHAFHAQCLIAHVTRCTNEAQAEYILDLQ
KQLTLIGGEARKDSNGSLTEESITSVTPVDKLRSQLDDAIASECPFCGDLMIREISLNFI
LPEEALQVASWEIKPSSLGSQRTLSLPL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagcaggaagacaggtattcacggtggaccttctagaaagatacgctgcgaag
ggacgcggagttataacttgcatggccgccggcaacgacgtcattttgttgggcaccagt
aaaggttgggtcatccgccacgatttcggcctcggcgactccaccgagattgatctgtct
acgggtcgacccggagagcaatcgatccacagggtgtttgttgatccaggagggagtcat
tgcattgccactgtagttggtagtggaggtgttgatactttttatactcatgccaagtgg
attaagcctcgagttttaaccaaattgaaaggtcttgttgtcaatgctgttgcctggaat
agactactcattactgaagcttcgacaaaggaagttattcttggtacggataatggccaa
cttcatgagattgcggttgatgagaaggacaagagggagaagtatattaagtttctgttc
caattgggggaacttcccgaagctttcatggatttacagatggaaacagctagcataatg
aatggaactagatactatgtaatggctgttactcctacacgactttactcttttactggg
attggatccttggagactgtttttgcaagttatttagatcgtgctgtgcatttcatggag
cttcccggtgaaataccaaacagtgaactgcatttctacatcaagcaacgaagagctgtg
cattttgcctggctttcaggagctggtatctatcatggtggcctaaattttggagcacat
catggctctccaaatggagatgaaaattttgtggagaacaaggctctattggactattca
aaattgtctgaaggtgctgaagcagtaaaaccgagttctatggcagtgtctgaatttcat
ttcttgcttcttattgggaataaggtcaaggttgtgaatagaattagcgagaacatcatt
gaggaacttcagtttgacctaacatcagaatcagtttccaggggtatcatgggattatgt
agtgatgccactgctggattgttctatgcatatgaccaaaactctgtttatcaagtgtct
gtcaatgatgaaggccgagatatgtggaaggtttatctggacttgaatgagtatgctgga
gctttggcaaattgtcgtgacccactccagagagaccaagtatacttagtacaggctgaa
gctgcatttgcctccaaggattatcacagagcagcatctttctttgcaaaaattaactat
atgttgtcatttgaggagatcactctaaagttcattaccataggtgaacaggatgccttg
agaactttcttactccggaagcttgataatcttgcaaaggatgataaatgccaaataaca
atgatctccacttgggctactgaattgtacttggacaagataaatcggctgctcttggaa
gatgacactgctgtggttaatcatggttcagagtaccaatcagttattaaagagttctgt
gcttttcttggtgattgcaaggacgtattagatgaagcaactacaatgagacttctggaa
agttatggtcgggttgaagaactagtatattttgctagtctaaaggagcagtatgaaatt
gttgttcaccactatattcagcaaggagaagcaaagaaagcacttgaagtacttcaaaaa
cctgctgttcctatagaccttcagtataagtttgccccagacctcatcatgcttgatgca
tatgagactgtggagtcatggatggccacaaacaacctgaacccgcggaaactgattcca
gcaatgatgcgttattcaagtgaacctcatgcaaagaatgaaacacatgaggtcatcaaa
tatttggaatactgtgttcatcgtttgcataatgaggatcctggagttcacaacttgctt
ctctccttgtatgccaagcaggaagatgatagtgcacttttgcgtttcctacaattcaag
tttgggaaaggaagggaaaatggccctgaattcttctatgatcccaagtatgccttgcgc
ctatgcctaaaggaaaagcgaatgcgtgcctgtgttcatatatacagcatgatgtctatg
catgaagaagcagttgcgcttgccctacaggttgatcctgagcttgcaatggctgaagct
gacaaggttgaagatgatgaagacttaagaaagaagctttggcttatggttgccaagcat
gttattgaacaggaaaagggggctaaacgggagaacatacggaaggctatagcatttctg
aaggaaactgatggccttctaaagattgaggatatattaccattctttccagactttgct
ctgattgatgacttcaaagaggcaatttgctcatcgctagaggattacaacaagcaaatt
gaactactgaaacaggagatgaatgatgcaacacatggtgcagacaacatcagaaatgat
atcagtgcacttgctcaaagatatgctgtgattgagcgtgaagaggaatgtggggcttgt
aggcgtaaaatcttaaccatgggtagagagtaccagatggctcggggttacacatccatc
ggaccaatggcccctttctatgtctttccatgtggacatgccttccatgcacaatgcctg
attgctcacgtgacacgttgtaccaatgaagctcaggcagagtatatactggatctgcag
aagcaacttaccttaattgggggtgaagcaaggaaggattcaaatggtagcctaactgag
gaatccataaccagtgtgaccccggtagataagctccgatcacagttggacgatgccata
gccagtgaatgccctttttgcggtgacctgatgatccgtgagatatctttgaattttatc
ctcccggaggaagcacttcaggttgcttcatgggagataaaaccaagtagtcttggaagc
caaaggactctttctttacctttatga
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