Quercus lobata (valley oak): 115955892
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Entry
115955892 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115955892 isoform X1
KO
K24155
rabconnectin-3a
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
115955892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115955892
Membrane trafficking [BR:
qlo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
115955892
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
115955892
RAVE complex
115955892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
Beta-prop_EML
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_Gbeta
Beta-prop_TEP1_C
Beta-prop_Aladin
Motif
Other DBs
NCBI-GeneID:
115955892
NCBI-ProteinID:
XP_030930144
LinkDB
All DBs
Position
8:complement(45711178..45731232)
Genome browser
AA seq
2516 aa
AA seq
DB search
MPDPNPIPGMDPTDHLPLALLPSDPIPPAPTRSSPPGSTIDVLPNMSGYSWVAYAASSIL
VISHFPSPDETLIGPIFRQLLQLSSSAIAAVSWSPVSPSNGDLAAAVDNCIRLFQHDSAT
SKGSFCWSQNAVLVQSTKVEAIQWTGSGDGIVAGGIEVVLWRNSGKSWEIAWKLKAECPQ
TLVSATWSIEGPLATAAYPSELQTEEPRVDVASKCVLVCHMKGKNDYAKTELYHPLPVSL
IQWRPSTGRLLNRDVKHPSRHILLTCCLDGTVRLWCETDNGRVRKIGKETNDHRTMKRSF
CVVAVIEIDQALKGTLGMDVSVLWATELGGLLKSGDGVNQFFSTEGSGHDEAGRCEWLVG
FGPGMLVYFWAIHCLDDVSPMRFPRVTLWKRQELQGFEVGELRRSSFSNVKDRLLLNKVF
MSRNRLSGPPMICSLIHLLPCDSLVWLLLNTQTLNKMENTSLNKSQTENYLSCSATGILN
LGGHAGKIIQVAVYPYSGEVELAVSLDSNGLLLFWSLSTISNCILGRPTLIPTWKLYGEL
VTKDSYSKYTCLMWAPSVLDDKLVLLMGHIAGIDCFIVRICPNEEENIECHYLFTVPFTG
HGPYEDGPTNIYSNSLSSTCNKTFKYNKFMILGIWMKGFWALSWEITLHSFDLSASCCEC
NFGTRDAAEGSMWKFESVFAGKRYCLAVNPSSSYLPDPHSHDQVTSFAVVCPGSLTFEQQ
KVTSNNDPSCSYPAYIMATGCSNGSLKLWRSYLGRPSTLHVPWQLVGMFVAHQAPISAIC
LTGCGQKIATFSTECHPNSVSTLHIWHTVHLTGAGTFMLEDTLFLDKDIVALNWLTLGNG
QLLLGVCMQNELKVYAQRRCGGQALLNSGKALKMDIWICIAFSHTIPPIHDFLWGPRAAA
VIIHDTYFCVFSQWLFLEHKKHQVEFHLNYNKENCLSCDGRTDEGILSAVFTDYDIGNFK
ELSIENGSGECKSGLPVKISKNDYISSNLFVEKVPLILGSGSKLGLWSMLEVVERFGGSV
PSYHPEALFMNIYSGNWKRAYMAVRHLVEFLTSNYGSKMETVSAKSSVTIPQILLSNYFE
GIFLRNSTDKGFQWSGDLITTSSQFQSSTNQFAFNSESIASNNIFTSSSTKSELGGFVKP
LENLYELAAINNKEKMQILAIIDLLGEVSNPHASTYESLDEPGRRFWVALRFQQLHFFQK
LGRTASVGELVVDSGMIVWAYHSDCQENLFGAVLANEPSWQEMRAMGVGFWFTNTTQLRS
RIEKLARVQYLKKKDPKDCALLYIALNRLQVLAGLFKISKDEKDKPLVGFLARNFQEEKN
KAAALKNAYVLMGRHQLELAVAFFLLGGDTYSALSVCVKNLGDEQLALVICRLVEGHGGP
LQHHLITKFLLPSAIEKGDYWLASLLEWELGNYLQSFCIMLGFQINPVTEKSALLSKHVA
FLDPNIGLYCLALASRNSMRNAVGEKNTAVLVRWATLMTVTALKRCGLPLEALECLSSSQ
SVLGNTDEESNDAGNFEILYRILKPSPRDSSNWLSCDVAFQLESLDKLDLALPYFSKLMR
EHPSWPDTIIGSAGASTCSKEYNIHQHDKLLQNFQHKLYIGLEQLEQRCSLVPAHIISMM
LVSLCNHGFLFIGYDILHGYNSQYQSQDESHTVDSFHKPLLKATQEISLLFSRFITVCSI
SCSQPKSGYIENDVSAESRSKCLDAWGYFFQGLILSLWSLRASLRMISNCVTQDLIKKPL
IFLDLFEYIVHVASAWLQKNSRVLILMVQPLLIMYTNGHMPNEVDIMNLKKLLPQIAELG
AQNLLIDEKAKGLQALNSVPDKQAVDAMHSIPEDERWKIIGACLWQHTARFMKQKLDLVF
DKVENKLTGSTTEEIRLVSLSLAELLKTTLTNLSSYHVKQVASFLWHKVENGLPVMTLIW
LKGSSQPHPRVSYEGTVSVDIMKNKDESSISEILWDICVGSEILFEGFAQDNINLSHCFD
HKPSKAWSDRCMGLGVNETEESNTYDGMISSSSTSSEAGSPARGLFRNGPTFLSSWEKDT
TLKKEVTTFQNPREIYKRNGELLEALCINSIDEGQAALASNRKGILFFNWEDGMSFSGQS
DYIWSEADWPKNGWAGCESTPVPTCVSPGVGLGSKKGLHLGLGGATFGTGSLAKPGRYLT
GGGAFGIPGYAGIGASGLGWEIQQDFEEFVDRPATVENVCTRALSSHPSMPFFLVGSSNT
HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDDCGHRFATAASDGTICIWQLE
VGGRSNIRPTESSLCFNTHASDVTFISSSGSIIAAAGNSSNAVNVVIWDTLAPPSTSRAS
IICHEGGARSLSVFDNDIGSGSVSPLILTGGKDGDVGLHDFRYIATGRTKRHRHPDNGEQ
SITSSSIDMRTGDQNRNGMLWYIPKAHLGSITKISTIPNTSLFLTGSKDGDVKLWDAKRA
KLVYHWSKLHERHTFLQPSSRGYGGVVRAAVTDIQVFSHGFLTCGGDGTVKLVDLK
NT seq
7551 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaccccaacccaattccgggcatggatcccaccgaccacctcccactcgctctc
cttccgtcggacccaataccacccgccccgacccgatcctccccacctggatccaccata
gatgtcctcccaaacatgtcaggctactcctgggttgcctacgcggcctcctcaatcctc
gtgatctcccatttcccttcccccgacgaaaccctaatcggccccatcttccgccagctt
ctccagctctcctcctccgccatcgccgccgtctcctggtcccctgtctctccctccaat
ggcgacctcgccgccgccgtcgacaattgtatccgcctcttccaacatgactccgccacc
tccaaaggttctttttgttggagccagaatgcagtacttgtgcaatctacaaaggtggag
gcgatccaatggacgggctccggagatgggatagttgctggtggaattgaggtggttttg
tggagaaacagtggcaagtcatgggaaattgcttggaagcttaaagcagagtgtcctcaa
actctggtttctgcaacatggtcaattgagggacctttggcaactgcagcttatcctagt
gaactgcagactgaagaaccgagggttgatgtggccagcaaatgtgtgttagtatgtcac
atgaaaggaaaaaatgattatgcaaaaactgagttatatcatcctttgcctgtttcattg
attcaatggaggccatcaacaggaagacttttgaacagagatgtaaagcatccatcaaga
cacatactgctaacatgctgcttagatggaacagtaaggttatggtgtgagactgataat
ggaagggtcagaaaaattggcaaggagaccaatgatcacagaaccatgaagcggtctttc
tgtgtagtcgctgtaatagagatagaccaggccttaaaaggaactctgggcatggatgta
tctgtgttgtgggccacagaacttggtggtcttttaaaatctggtgatggtgtcaatcaa
tttttctccacagaaggatctgggcatgatgaggcgggcagatgtgagtggttagttggg
tttggtccaggaatgttggtatacttttgggctattcactgtcttgatgacgtctccccg
atgaggttccctcgagttacattatggaagagacaagaactacagggatttgaagtggga
gaacttcgtagaagtagtttttcaaatgttaaagacagattacttcttaataaagttttc
atgtcaaggaatcgcttgtctggtccaccaatgatctgctctttgattcatttattacct
tgtgattctttagtttggttactgttaaatactcaaacattaaataaaatggagaataca
tctcttaataaatcccagacagagaactatttatcatgttctgctactggaattctaaat
ttaggaggtcatgctgggaaaatcatacaagtcgctgtgtatccttatagtggtgaagtt
gaattggctgtttctttggattctaatggattgcttcttttttggtcactttccaccatt
tccaactgcatattgggtcgtccaacattgattccaacatggaaactttacggagaactt
gtaactaaagattcatattccaaatatacatgcttgatgtgggcaccttcggtattggac
gacaaactggttcttcttatgggacatattgctggaattgattgctttatagttagaatt
tgccccaatgaagaagaaaatatagaatgtcactacttattcaccgttcctttcaccggt
catggtccatatgaggatggtcccacaaatatctattcaaattctttgtcttcaacttgc
aataaaaccttcaagtataataaatttatgattttggggatatggatgaaaggtttttgg
gctctgtcatgggaaattactctccattcttttgatttatctgcaagctgctgtgaatgt
aattttggcactagagatgctgcagaaggcagcatgtggaaatttgaaagtgtttttgct
ggtaaaagatattgtcttgctgtgaatcctagctcatcatatttaccagatcctcactcc
catgatcaggttacaagttttgctgtggtctgtccaggtagtcttacttttgaacaacaa
aaggtgacttcaaataatgatccttcttgtagttatcctgcatatattatggccacaggc
tgttctaatggctctttaaaactgtggagaagttaccttggtagaccctcaacccttcat
gtaccatggcagcttgtgggtatgtttgttgcacatcaagctcccattagtgctatatgc
ttgactggttgtgggcagaagattgcaaccttctctacggaatgtcatccaaattctgtc
agcacccttcatatatggcacactgttcaccttacaggagcaggaacttttatgttagaa
gatacattattccttgacaaagatatagttgctttaaattggttaacattaggaaacggt
cagttattacttggagtttgcatgcagaatgagttgaaagtatatgctcagaggcgttgt
ggtggtcaggctttgttgaactctggaaaagctttgaaaatggacatatggatttgcatt
gcattttctcatactatccctcccatccacgacttcctttggggacccagggctgcagct
gtgattattcacgatacttacttctgtgtatttagtcagtggttgttccttgagcataaa
aaacatcaagttgagttccatctgaattataacaaggaaaattgcctcagttgtgatggt
agaacagatgagggcattctttctgcagttttcactgattatgacattggtaatttcaag
gaattgtcaatcgaaaatggtagtggagaatgcaagtctgggctgcctgtaaagattagt
aagaatgattacatatccagcaatttgtttgtagaaaaggttccattgatacttggttcg
ggttccaagcttggtttatggagcatgctagaagtagtggagaggtttggtggatctgtg
cctagctatcaccctgaagcactctttatgaatatatattcaggtaattggaaacgtgca
tacatggctgtgaggcatcttgttgaatttcttacctctaattatggttctaagatggaa
actgtctctgcaaagtctagcgtcactatcccacagatccttttatcaaattattttgaa
ggaatttttttgagaaattcaactgataaaggatttcaatggagtggagatttgatcaca
acatcgtcacagtttcagagcagcacgaaccaatttgcattcaattctgagtctattgct
tccaataatatattcacttcctcttccacaaaatctgaactcggtggctttgttaagcct
cttgagaacttgtatgagttagcagctataaacaacaaggagaagatgcaaattcttgca
ataatagatcttcttggtgaagttagtaacccacacgcttctacctatgaaagtcttgat
gaacctgggcgaaggttttgggtggcattgaggtttcagcaattacattttttccaaaaa
ttaggtagaacagcatccgtgggagagttggttgttgactctggtatgattgtatgggct
taccactctgattgtcaggaaaatttatttggtgctgttctagctaatgaaccatcttgg
caagaaatgcgggcaatgggagttggattttggtttactaatacaacacaattgcgttca
cggatcgagaaactagcgagagtacaatatctgaagaagaaagatcctaaggattgtgca
ttattatatatagcattgaatagactccaagtgctggctggcctttttaaaatcagcaag
gacgagaaggataagcccttggtgggttttcttgcacgtaattttcaggaggagaaaaat
aaggctgctgctttgaagaatgcttatgttttaatggggagacatcagctagagctggcc
gttgctttctttttgcttggaggtgatacttattctgctcttagtgtttgtgtaaagaac
cttggggatgagcaacttgcactagtaatttgtcggcttgttgaggggcatggtggacca
ttacagcaccatctaataacaaagtttttgcttccatcagcaatcgagaaaggcgactac
tggctagcaagcctactggagtgggaactggggaattacttgcagtcattttgtatcatg
cttggtttccagatcaatcctgtgactgaaaagtctgcacttttgtctaaacatgttgcc
tttttggacccaaatatcggtctttattgcctagcactagccagcagaaatagcatgaga
aatgctgtaggggagaaaaatactgcagttctggttaggtgggcaactttgatgacagtc
actgccttaaaaagatgtgggcttcctcttgaggctttggagtgcctttcttcttcccag
agtgtacttgggaatacagatgaagagagtaatgatgctggaaattttgaaattctatac
aggattctaaagccttctccacgtgattcgtctaactggctttcatgtgatgtagctttc
cagttggagtcccttgataaattagatttggcacttccatacttctcaaaactgatgaga
gagcatccaagttggccagacaccattataggatctgctggagctagtacatgctccaag
gagtataacattcatcaacatgataaattacttcagaacttccagcataagttatatata
gggcttgaacagttagagcagaggtgttccttggttcctgcccatataattagcatgatg
ttagtctcactgtgcaatcacgggttcttgtttattggatacgatatattgcatggttat
aattctcaatatcagtcacaagatgagagccatacagttgacagtttccacaagccactt
ttgaaggctacccaagagatttccctcttattttcacggtttattactgtctgcagtata
agttgctctcaaccaaagtcgggttatattgagaatgatgtgtctgctgaaagtaggtct
aagtgtttagatgcttgggggtacttctttcaagggcttatattgtcgttgtggagttta
agagctagtttgagaatgatttccaactgtgtcacccaagatctcatcaagaaacccctt
attttccttgatttatttgagtatatagtacatgttgcatctgcttggcttcagaaaaac
tcaagagtgctcattctgatggtgcaacccctcttgatcatgtatactaatgggcacatg
ccaaatgaagttgatataatgaatttgaagaaactacttccccagattgcagagttgggg
gctcagaatctattaatagatgagaaagcaaagggccttcaggctttaaatagtgtgcca
gataaacaagctgtagatgcaatgcattcaattccagaagatgaaagatggaaaattata
ggtgcttgtttgtggcaacacacggcgagattcatgaaacagaagctggatttagtgttt
gataaagttgaaaataaattgactggcagtacaacagaagagatcaggctggtctcattg
agcttggcagagttactgaagaccacactcacaaatctttcttcttatcatgtaaaacag
gttgcatcatttctatggcataaagtagagaatggattgccggtaatgactcttatatgg
ttaaaaggatctagccagcctcaccccagagtctcctatgagggtactgtaagtgttgat
atcatgaaaaacaaagatgagtcttcaatttctgaaatactatgggatatctgcgttggt
tctgagatattatttgaaggctttgcacaagataatataaatttgtcacattgttttgat
cataaaccctctaaagcatggagtgatagatgtatgggtttgggagtaaatgaaacagag
gaatccaacacttatgatggtatgattagcagtagttctaccagcagtgaagctggatca
ccagctagagggctatttcgtaatggccctacttttctaagttcctgggagaaagataca
acgcttaaaaaggaggttacaactttccaaaaccctagagaaatctataagagaaatggg
gagcttttggaggcattgtgtatcaactctattgatgaagggcaagctgcacttgctagc
aatcgtaagggcatactattttttaattgggaagatgggatgtctttcagtggtcagtca
gactatatctggtcagaagctgattggccaaagaatgggtgggctggctgtgaatcgacc
ccagttccaacatgtgtatctcctggcgttggtctgggaagcaagaaagggttacacctt
gggttgggtggagcaacttttggtacaggctctttggcaaaacctggcaggtacttgaca
ggtggtggagcatttgggattccaggttatgctggtattggtgcctctggcttaggttgg
gagattcaacaagactttgaggagtttgttgatcgaccagctactgtggagaatgtatgc
acaagggctctctcaagtcatccctctatgcctttcttcttggttggttctagtaataca
cacatttacttatgggagtttggtaaagataaagctactgcaacttacggggtgctgcct
gctgcaaatgtccctccaccatatgctcttgcatcaatatcagctttacagtttgacgac
tgtggacacagatttgctactgctgcctcagatggaaccatatgcatatggcagctggag
gtaggagggaggagtaacattcgtcctacggaatcatctctttgcttcaatacccatgcg
tcggatgtcacttttatctcttcaagcggatcaatcattgctgcagctggaaatagctcc
aatgctgttaatgtggttatatgggatacattggctccaccttccacctctagagcttcc
attatttgtcatgaaggtggtgcccgctccctttccgtgtttgataatgacataggaagt
ggttctgtttctcctcttattttgactggtggtaaagatggtgatgttggactccatgac
ttccggtacattgctactggtaggactaaaagacacaggcaccctgataatggtgaacaa
agcattacatcttcaagtattgacatgcgaacaggggaccagaatcgaaatgggatgctt
tggtatataccaaaggctcacttagggagtatcaccaaaatatctaccatcccaaatact
agtttgttcttaactggaagcaaagatggagatgtcaaactttgggatgccaaaagagct
aagttagtatatcactggtcgaaattgcatgaaagacacacctttctgcaaccaagctct
cgaggctatggcggagttgttcgggctgctgttacggatatacaagttttttcacatggt
tttcttacatgcggtggagatggcactgtaaagctggtagatctcaaatag
DBGET
integrated database retrieval system
