Quercus lobata (valley oak): 115957249
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Entry
115957249 CDS
T07350
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
qlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115957249
09124 Replication and repair
03420 Nucleotide excision repair
115957249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115957249
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115957249
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115957249
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115957249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
115957249
NCBI-ProteinID:
XP_030931305
UniProt:
A0A7N2M7R2
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Position
8:complement(1591663..1601595)
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AA seq
609 aa
AA seq
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MASGHVIKRAKYKTSPKGAGTPGVLKMTENKIMFKPNDPTSASKIDVEFRLIKGYKNTKE
GSNNPPLLNLSLEQGGSYIFEFENFLDLQVCREFVGNALTKSGDAAKAKSGDTAKAKSGE
AVKAASDRSTVTYPDEQLISSAEMELRIKLLRENSELQNLHKKFVLGNILTESEFWATRK
KLLDGDSGTKSKQRVGFKSSMILDIKPMTDGRTNKVTFNLTPEIKYQIFALKPAVHRAFL
NHVPNKMTEKDFWTKYFRAEYLHSTKNAVAAAAEAAEDEELAIFLKDDDILANAARQKIR
RVDPTLDMEADQGDDYMHLPDHGIFRDGSKEITDSQHEQFKRTFLQDLNRQGEVVLEGRT
IDVELEDPRTVAEALAQSRQESDENAKQERLDRISRMTEMEDLQAPHDHPLAPLCIKDPR
DYFDSQQLKTSDDTRAGSEQLRCSLSSEEAYGSLRGSISEIKAMGLSDPVVRPEVAVMVL
NGLTQNISSTKFQLGKNAQEGILNSLPNTTKEELLHHWISIQELLRHFWSSYPITTSYLY
AKVSRVKDAMSKIYPQLEEIKESVPSDLRQQVFLLVRPMHQALDAAFQHYEADLQKRSAK
SGDKPNGYV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgggcatgtgattaaacgcgccaagtacaagacctcacccaaaggcgctggt
actcctggtgttttaaaaatgactgagaacaagattatgttcaagccaaatgatcccact
tcagcctcaaagattgatgtagagtttagattgataaaaggttacaaaaacactaaggag
ggatcaaacaatccaccattgcttaatctctcccttgagcagggtggaagttacattttt
gagtttgaaaatttcttagatcttcaagtttgtcgagagtttgtgggaaatgctcttaca
aagtccggagatgctgcaaaagcaaagtctggagacactgcaaaagcgaagtctggagag
gctgtgaaagccgcttctgatagatctacagttacttatcctgatgaacaactcatcagt
tcagcggaaatggagcttcggataaagctattgagagagaatagtgagctgcagaacctt
cataagaaatttgtgcttggtaatatcttgacagaatctgagttctgggctacaaggaag
aagttgcttgatggagacagtggcacaaagtccaaacaacgggttggttttaaaagttca
atgattctagacatcaaacccatgactgatggccggacaaacaaggttacattcaatttg
acaccagagatcaaatatcagatttttgctctaaaaccagctgttcaccgggcattcctt
aatcatgttcccaataagatgacagaaaaggatttctggacaaaatattttagagcagaa
tatctccatagtacgaaaaatgctgttgcagctgcagcagaggctgctgaagacgaggag
ctagccatttttctgaaggatgatgacatattggcaaatgcagctcggcagaagattcga
cgggttgatccaactcttgatatggaagctgaccaaggagatgattacatgcacctccca
gatcatggaatttttcgtgatggtagcaaggaaataactgattcacagcatgagcaattc
aagagaactttcttgcaagatcttaaccgacaaggcgaagttgttctcgaaggaagaact
attgatgtagagttggaagatccacgaactgtagcagaagcacttgcgcagtcaagacag
gaatctgacgagaatgcaaagcaggagaggcttgatagaatttcacggatgactgagatg
gaggaccttcaggcacctcatgatcaccctcttgctccactttgtatcaaggatcctcgt
gattactttgattcccaacaacttaaaacttctgatgatacacgagctggatcagaacaa
ttaagatgtagcctgagctctgaggaagcatatggttctttgaggggttcaatatcagag
ataaaagcaatgggattaagtgatcctgtagtcagacctgaggttgctgttatggtcctt
aatggattgacccagaacatctcaagtaccaaatttcaacttgggaagaatgctcaagag
ggtatactgaacagcttgcccaacacaactaaagaggaactactacatcattggatatcc
attcaagaattactgaggcacttttggtcttcatatccaattactacatcatatctttat
gctaaggtgagcagagtgaaggatgccatgtcaaaaatttatccacagctggaggaaata
aaggaatcagttccttcagaccttcgccagcaggtttttctccttgttcgtccaatgcat
caggctctagatgctgcttttcaacattatgaggcggatttgcagaagagatcagcaaag
agcggagataaaccaaatggatatgtgtag
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