Quercus lobata (valley oak): 115957500
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Entry
115957500 CDS
T07350
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115957500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115957500
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115957500
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
115957500
NCBI-ProteinID:
XP_030931615
UniProt:
A0A7N2MER9
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Position
8:complement(57650662..57656087)
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AA seq
872 aa
AA seq
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MDRLSERDRRSKRTRDDRDDRDRDHKHRSSRDDKHRERERDRDSSDHHHYSSSHRHRSGR
ERSHEDREGSRDRDSKRENEREGSRERDRTKHRDAKRELSDDEELERLYDRDGSVERRHS
SSHKRKERGVSEERSDGVDKRARVSERKEAENGEGRKEKKERRNFGDRVKEEEEIEVDRG
FEDEKRVNFIDSKAKEEVSDELFDNGRSRRGTASASNGAALESLTMESSSVHEMSLPPGH
PLPTKVSSISTTNENKGVTVTRSHEVPGKSSTDGTSSAAGKSGSLSLDALAKAKKALQMQ
KELSEKLKKIPLLNKGASTSSEGRSNLGLNEEPKAQSVSTGTGKGPVLLTAPASVSAGVI
SSSSALPVASAAADPGASAGLTAVPNFEAVKRAQELAARMGFRQDPEFAPLINLFPGQVA
TDVAVPQKPTKAPVLRLDALGREIDEHGNVVNVTKPSNLSTLKVNINKQKKDAFQILKPE
LDVDPDSNPHFDERMGINKTKLLRPKRMNFQFVEEGKWSKDAEHIKLKSKFGEAQAKEQK
AKQAQLAKAKAAPDINPNLIEVAERVITKEKPKDPIPDVEWWDVPLLQTGTYGDITDKAM
DNIKLEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDKQELIRQ
GLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERR
EKKERKLFDESNTPEAIVSVYKINDLSHPQTRFKVDVNAQENRLSGCAVICDGISVVVVE
GGNKSIKRYGKLMLKRINWASAVKEEDEDEDESDDKPPNKCVLVWQGNVAKPNFNRFSVH
ECMTEAAARKIFADAGVGNYWDLAVNYTDDQT
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcctctcggagagagacagaagaagcaagcgcaccagagatgatagagacgat
cgcgaccgagaccacaagcaccgatcgtccagagacgacaagcaccgcgagcgcgagcgg
gaccgcgattcctccgatcaccaccactactcttcttctcatcgccaccgatctggtcga
gagcgctctcacgaggatcgagaagggagcagagaccgcgattcgaagcgcgagaacgag
agggaagggagtagagagagggataggactaagcatcgcgacgcgaaacgcgagctgtcc
gatgatgaggagctcgagcgactgtacgatagggacgggtccgtggagaggcggcattct
tcatcgcacaagaggaaagagagaggcgtgagcgaggagaggagcgatggagttgataaa
agagctagggtttcggagagaaaggaggcggagaatggagaagggaggaaggaaaagaag
gagcgaaggaattttggagatagagtaaaggaagaagaggaaattgaggttgataggggc
tttgaagatgagaagcgagtgaatttcattgattctaaggccaaggaagaggtgagtgat
gagctttttgacaatggtcggagccgccgtggcaccgcctctgccagtaatggtgctgct
ctggaatcactcaccatggaatccagcagcgtgcatgagatgtctttgccccctggtcat
ccccttcctacaaaggtatcttcaatttctaccacaaatgaaaataagggagttactgtt
accagatctcatgaggttcctggaaaatctagtacagatgggacatcttcagctgctgga
aaaagtggaagtctatctcttgatgctttagctaaagctaagaaagctttacaaatgcag
aaagaattgtcagagaagctgaagaaaattccccttttgaacaagggtgctagcacaagt
tcagagggcaggtcaaacttaggattgaatgaggaaccaaaagcacaatctgtgtctact
ggaacagggaaagggccggttctgttaactgcccctgcatctgtttcagcaggggtgata
tcaagctcatcagccttacctgttgcatctgctgcagctgatcctggtgcttctgcaggc
ctcacagctgtacccaattttgaagcagtaaaacgtgcgcaggaacttgctgccaggatg
ggttttcggcaggacccagagtttgctcctctcataaacttgtttccaggtcaggtggca
acagatgttgctgtcccacaaaagccaaccaaggcccctgttcttcgtcttgatgcgctt
ggtagggagatagatgaacatggaaatgtggtgaatgtgactaaaccaagcaaccttagc
actctaaaggtcaacatcaataaacagaaaaaggatgcatttcagattctgaaacctgaa
ttagatgttgatccagactcaaatcctcattttgatgagaggatgggtattaacaaaact
aagcttttgaggcctaagaggatgaatttccagtttgttgaagaaggcaaatggtcaaaa
gatgctgagcatattaaactgaagagtaaatttggagaagcacaagcaaaagagcagaag
gcaaaacaggcacagttggctaaggcaaaggcagcacctgatattaatccaaatttaata
gaggtagcagagagagttatcaccaaagaaaaacctaaggacccaattcctgatgttgag
tggtgggatgtgcctctcttgcaaactggtacttatggtgacattactgataaagccatg
gataatataaagttggagaagatcactatctatgttgaacatcctcgtccaattgagccc
cctgctgagccagctcctccaccacctcaacccttgaagttaaccaagaaggagcagaag
aaactccgtactcagcgacgtttggctagggagaaagataagcaggagttgataagacaa
ggcctgattgagcctccaaaaccaaaagtgaaaatgagcaatctgatgaaagtccttggc
tctgaagcaacccaagatccaactaggcttgaaaaggaaatcaggagtgcagcagctgaa
cgtgagcaagctcacatagacaggaatattgctcgtaaactcactcctgctgagcgccgg
gaaaaaaaagagcggaagctctttgatgagtcaaatacaccggaggccattgtatcagtt
tacaagatcaatgacctgtcacaccctcagacacgcttcaaagttgatgttaatgcccaa
gagaaccgcttgagtggatgtgctgtgatttgtgatggtattagtgttgtggttgttgaa
ggaggaaacaagtccataaagaggtatggcaagcttatgcttaaacgcataaattgggct
tctgctgtaaaagaggaggatgaagatgaagatgaaagtgatgataaacctcctaacaaa
tgcgtcttagtttggcaagggaatgttgccaaaccgaatttcaacagattttcagttcat
gagtgcatgacagaagctgctgcccggaaaatttttgctgatgctggtgttggtaattac
tgggatctagctgttaactatacagatgatcaaacataa
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