Quercus lobata (valley oak): 115957596
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Entry
115957596 CDS
T07350
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B-like
KO
K03253
translation initiation factor 3 subunit B
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115957596
03012 Translation factors [BR:
qlo03012
]
115957596
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
115957596
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
eIF-3
115957596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
RRM_1
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_ELP1_1st
WD40_Prp19
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
115957596
NCBI-ProteinID:
XP_030931744
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Position
8:complement(65003407..65010265)
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AA seq
717 aa
AA seq
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MADVMVMKDIETTASFLGIDFFPLDLNSIHLPPGQDFGIPSDDEEGDKNLNKDLELYSNG
FGNIIIVDNLPEVDAKTKKEKLEHVIHRIYSQIGVIKENGLCMPVDPQTQSTLGYCFIEF
NTPEEAELAKERTNGYKLDKRHIFAVNMFDDFDIFMKVPDQWAPPEFKPYTPGENLQQWL
TDEKARDQFVIRAGSDTEVLWNDAMQLKAEPVYERAFWTESFVRWSPLGTYLATLHRQGA
AVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPCGANMVLINIFDVRTGK
VMRGFKGSADDFGIGATGGVKGVSWPVFRWAGDKEDKYFARIGKNIISVYETETFSLIDK
KSLKVENVVDFSWSPTDPIFALFVPELGDHPARVSLMQIPSKDELRQKNLFSVSECKMYW
QSNGDYLAVKVDRYTKTKKSTCTGFELFRIRERDIPIEVFELENKNDKIIAFAWEPKGHR
FAIIHGDNPRPDISFYSMRSVNNTDKVKKLTTLKGKQANTLFWSPAGRFIILAGLKGFNG
QLEFYDVDELETMATAEHFMATDIEWDPTGRYVGTAVTSVHEMENGFNIWSFNGRLLYRI
LKDHFFQLLWRPRPPSVLSPEKEEEIAKNLKKYSMKYKVEDQDVSMLLSEQDRDKRRMLK
DEWDKWVNEWKHLHEVEKLERLELRDGEASDEEECEAKEVEVEEILDVSEEVLSFEE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgatggtgatgaaagacatagagacgacggcgtcttttctcggaattgat
ttcttcccactcgacctcaattccattcacctccctcctggccaagacttcggcatccca
agcgatgatgaagaaggagataagaatctgaataaggatttggagttgtacagtaatggg
tttggcaatattattattgttgacaatctccctgaagtagatgcgaaaacgaagaaagaa
aagcttgaacatgttattcatagaatctacagtcagattggtgtcatcaaggagaatggc
ctttgcatgcctgttgatcctcagacacaatctaccttaggctattgctttattgagttc
aatacccctgaggaagctgagcttgcaaaggagagaactaatgggtacaagttggacaag
cgtcacatttttgcggtcaacatgttcgatgattttgatatcttcatgaaagttccagat
cagtgggcccctcctgaatttaagccatatactccgggggaaaatcttcaacaatggctg
actgatgaaaaagctcgtgatcagtttgtgattcgtgctggttcagatacggaggttttg
tggaatgatgcaatgcagctgaaggctgagcctgtttatgagcgtgctttctggactgaa
agttttgtgcggtggtccccactggggacttacttggcgacacttcataggcaaggtgcc
gctgtttggggaggtgccagtacctttaatcgtcttatgcgttatgctcatcctcaggtt
aaactgattgatttttcccctggcgagaaatatttagtaacctatagcagtcacgaacca
agtaatccttgtggtgcaaatatggttctgataaatatttttgatgtgagaactggaaaa
gtgatgagaggcttcaagggaagtgctgatgactttggtattggagcaactggcggtgtt
aaaggggtgtcatggcctgttttcagatgggcaggggataaagaggacaaatattttgct
agaattgggaaaaacattatctctgtctatgaaacagaaaccttttcacttattgacaag
aaatccttgaaggttgaaaatgttgtggatttcagttggtcacctactgatccaattttt
gctctctttgttcctgaactgggtgaccatcctgctagggtgagtcttatgcaaatccca
agtaaggatgagttaaggcagaagaatcttttcagtgttagtgaatgcaaaatgtactgg
caaagcaatggggattatcttgctgttaaggttgatcgatatacaaaaacgaaaaaaagc
acatgcacaggttttgagctttttcgtataagagaacgggatattcccattgaggttttt
gagcttgagaataagaatgataagattattgccttcgcatgggagccaaaaggtcacagg
tttgcaattatccatggtgataacccaagacccgatataagtttctactcaatgcgctct
gtaaacaatacagacaaggtcaaaaagctcactactctgaaagggaagcaggcaaatact
cttttctggtcacctgctggtcgcttcattatacttgcaggattaaagggtttcaatgga
cagttggagttttatgatgttgatgagcttgaaaccatggcaacagctgagcattttatg
gcaacagatattgaatgggatcctactggaaggtatgttggaactgcagtgacttcggta
catgagatggaaaatggtttcaacatctggtccttcaatggcaggctactttataggatc
ttgaaggatcatttctttcagttattgtggcgcccaagaccaccgtcagtattgagtcct
gagaaagaagaagagattgctaagaacttaaagaagtacagtatgaagtacaaggtagag
gaccaggatgtttcaatgctattgagtgagcaagatcgtgataagcggaggatgttgaag
gatgaatgggacaaatgggtcaatgagtggaagcatttgcatgaagtagaaaaactggag
aggctggaactcagggatggagaagccagcgatgaagaggagtgtgaagcaaaagaagtt
gaagttgaggagatattggatgtttccgaggaggtcctttcgtttgaggagtaa
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