Quercus lobata (valley oak): 115957986
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Entry
115957986 CDS
T07350
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115957986
03015 mRNA surveillance pathway
115957986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115957986
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115957986
mRNA cycle factors
P-body specific factors
115957986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
115957986
NCBI-ProteinID:
XP_030932206
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All DBs
Position
8:complement(57151416..57173900)
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AA seq
1220 aa
AA seq
DB search
MDHHEDECRVGAENHGKQDEEEAAARLEEMKKSVESKMALRQSNMNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLTQGLLKVFFPGKSGDDLDADKNLKAMKKRSTLKLLLELYFVGVIED
SGIFMNIIKDLTNLEHLKDRDTTQTNMTLLASFARQGRIFLGLTFSGQEIHEEFFKGLNI
TTDQKKFFKKAFHTYYDAAAELLQSEHASLRQMEHENAKILNARGELSDENVSSYEKLRK
SYDHLYRNISSLAEALDMQPPVMPEDGHTTRVTTGEDASAPASGKDSSVLEALWDDEDTR
AFYEGLPDLRAFVPAVLLGEAEPKVNEQSAKTQEQQTELAPESDQRQQATQDTTEVSADS
GTLQEGKNLDRGKDKEEKDKEKTKDMDKEKGKDKDADKKGENEKEKLKGLEKTKDMDKEK
GKEKDSDKKGENEKEKLKGLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKL
VRALFTVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQMLEEEFNFLINKKDQMNIETKI
RNIRFIGELCKFKIATSGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRM
ANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLD
KNTIEHVLRQLRKLPWSECEPYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAIAVV
DEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLYLILVFGHGTPEQ
DALDPPEDSFRIRMVCTLLDTCGHYFDRGSSKRKLDRFLVHFQRYILSKGALPLDIEFDL
QDLFAELRPNMTRYSTIEEVNAAIIELEEHEHTVSTDKVSNEKHSDTEKRSRRSTSDATS
ANGQSINGTDENGVHEVIGDSDSESGSGSEPEGHDDEELDEENHDDGCDSEDEDDDDGGG
PASDEDDEVRVRQRAPEVDPLEEANFEQELKAVMQESMEQRRLELRGRPTLNMMIPMNVF
EGPTKDHHGRGGESGDETLDEEAGGSKEVPVKVLVKRGNKQQTKQMLIPRDCSLVQSTKQ
KEAAELEEKQDIKRLVLEYNDREEEELNGLGTQTINWSQGGGSRVASRGNTWEGTGSRAS
GSRHRHHNYSGGGVYYSRKR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaggacgaatgccgtgttggagctgaaaatcatggcaagcaagatgag
gaggaagctgctgctcgtcttgaggaaatgaagaaatcagttgagtcaaaaatggctctt
cgtcagagcaatatgaatcctgaaaggcctgattcaggatttcttaggacattggattcc
agcattaaacgcaatacagcagttataaaaaaactaaagcagataaatgaagagcagcgc
gaaggcctgatggaagatttgcgaggtgtcaaccttagcaaatttgttagtgaagccgtc
acagctatttgcgatgccaagcttagaagttcagatatacaagcagcggttcagatctgc
tctttgcttcatcaaaggtataaagatttctcgccaagcctgactcaagggctcttgaag
gtcttttttcctggaaagtctggggatgacttggatgcagataagaacttgaaggccatg
aaaaagcgcagcactctgaaactccttttggaactttactttgttggagttatagaagac
agtggcattttcatgaatatcattaaggatcttacaaacttagaacatttaaaggacaga
gatactactcagacaaatatgacccttcttgctagttttgctcgacaaggaagaattttc
ctaggacttacattctctggacaagaaattcatgaagagttttttaagggccttaatatc
acaacagatcaaaagaagtttttcaagaaggcgttccatacatactatgatgctgcagct
gagctacttcagtccgagcatgcttcacttcgtcaaatggagcatgaaaatgctaagatt
ctaaatgctagaggagagctcagtgatgaaaatgtctcttcatatgaaaagctgcggaaa
tcttatgaccatttgtaccgcaatatctcttctttagcagaagcacttgatatgcagccc
ccagtaatgccagaggatggtcacacaactagggttactactggggaggatgcttcagct
cctgcttctggcaaagattcttctgttctagaagctttgtgggatgatgaagataccagg
gctttctatgaaggtttacctgatctcagagcatttgtaccagcagtattattgggagaa
gcagaacccaaagtgaatgaacaatctgcaaagacgcaagaacaacagactgaactggca
cctgaatcagaccaacgtcagcaggctacccaagatacaacagaggtttctgcagactct
ggcactttgcaggaggggaaaaacttagatagaggaaaagataaggaagaaaaagataaa
gaaaagactaaagatatggacaaagagaaagggaaagataaagatgcagataaaaagggg
gaaaatgaaaaggagaaactaaaaggtcttgaaaagactaaagatatggacaaagagaaa
gggaaagagaaagattcagataaaaagggggaaaatgaaaaggagaaattaaaaggtctt
gaaggcacaaatttggatgctttattacagaggcttccgggttgtgtgagccgtgatctt
atcgatcaactgactgtagaattctgttatttaaattcaaagtccaatcgaaaaaagctt
gtaagggcactgtttactgtcccaaggacatctctagaactactaccatactactcacgc
atggttgccacactttcaacttgtatgaaggatgtctcttccatgctgttgcagatgttg
gaggaagagtttaacttcttaattaataaaaaggatcaaatgaacattgaaacaaagata
aggaatattaggtttattggagaactctgcaagtttaaaattgcaacatctggccttgtt
tttagttgtttgaaggcttgtttagatgatttcactcatcacaacattgatgttgcttgc
aatcttctcgagacatgtggtcgttttctgtatcgatctcctgaaactaccattcggatg
gctaacatgttggaaattttgatgcgcttgaaaaatgtcaaaaatctggatcctcgccac
agcacccttgtagaaaatgcttactacctgtgcaaaccacctgaaagatctgcacgagtc
tctaaagtccgtcctccattgcatcagtatattaggaaattgctattttcagatcttgat
aagaacaccattgagcatgtcctgaggcaacttcgtaaattgccatggagtgaatgtgag
ccatatcttttaaaatgctttatgaaggttcacaaagggaagtatggtcagattcactta
attgcttctctcactgctggtttgagtcgctatcatgatgagtttgccattgctgttgtt
gatgaggttttggaggagattaggcttgggctagaattaaatgattatgggatgcaacaa
agacgcattgcccatatgcggttcttaggggagctgtataattatgagcatgtagactca
tccgttatttttgagacactttatttgattcttgtctttggccatggcactccagagcaa
gatgcactagacccaccagaagatagtttccgcatcaggatggtttgtactcttcttgac
acctgtgggcactactttgatcgaggctcttccaagaggaagcttgatagattcttagta
cattttcagaggtatattctcagcaaaggtgcactacctctagatattgaatttgactta
caggacttatttgctgaattacggcccaatatgactcgatactctaccattgaagaggtg
aatgcagctataatagaacttgaggagcatgaacatactgtttcaactgacaaggttagt
aatgagaagcactctgacacagaaaagcgttcaaggaggagtacttctgatgccacctca
gcaaatggacagagcattaatggcactgatgaaaacggggtgcatgaagtcattggggac
agtgatagtgaatcggggagtggcagcgagcctgagggacatgatgatgaagagttggat
gaagagaatcatgatgatggatgtgatagtgaggatgaggatgatgatgatgggggtgga
cctgcttctgatgaggatgatgaagtccgtgtcaggcagagggcccctgaggtggaccct
ctggaagaagctaattttgaacaggagcttaaggctgtaatgcaggagagcatggagcag
cgccgtctagagctgcggggtcgacctacattaaatatgatgataccaatgaatgtgttt
gaggggcccacaaaggatcatcatggaaggggaggggagagtggagacgagacattagat
gaggaagctggaggaagcaaggaggttccggtgaaagttcttgtgaagcgtgggaacaag
caacaaacaaagcagatgttgatccctcgggattgctcacttgtgcagagcacaaaacag
aaagaagcagctgagcttgaagagaaacaagacattaagaggttggtattggagtataat
gatcgagaagaggaggagcttaatggattgggtacccaaacaattaactggtcacaaggt
gggggcagcagagttgccagtcgtggcaacacttgggaaggaactggtagtagggctagt
ggatcacgtcatcggcatcataattactcaggtggtggagtctattacagcagaaaaagg
tga
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