Quercus lobata (valley oak): 115958200
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Entry
115958200 CDS
T07350
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115958200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115958200
Membrane trafficking [BR:
qlo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115958200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
WDR55
WD40
Beta-prop_EML
Beta-prop_WDR5
WD40_WDHD1_1st
TPR_VPS8_2
Beta-prop_WDR3_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_Gbeta
Beta-prop_TEP1_2nd
zf_RING_Vps8
Beta-prop_Aladin
zf-RING_Vps41
Beta-prop_THOC3
WD40_Prp19
zf-RING_2
GNT-I
Motif
Other DBs
NCBI-GeneID:
115958200
NCBI-ProteinID:
XP_030932453
UniProt:
A0A7N2MBJ3
LinkDB
All DBs
Position
8:47217847..47234695
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AA seq
1962 aa
AA seq
DB search
MTKNLSSTSETLPAAMELDLDSFLNSPLTSDDDDDDDNKGNHHNLYSIPHRTIDEILNAS
DSSTSSPPTSPPSVYSRVSDPKHDQDDTVSVSTTKQPSSDFSSIPAQHHDENPSLHSRPG
SSSFSRVRPGINYPDDPFKRLSNSKPLPSLFGGVRSNAKPGAALAAAVAASRALPTPHAA
AIKSRRAASGSFQKVLEDSDAVSVSASDELSSNSEIRNAKEDEVLEGVIGNEGFAQGPSV
KEVESEAENVVQVDGLKVSSNHEELLRTSADSVSNFEIIEPRIGSSSISVEEDENNVNVD
ENASVLDRSSEILNSEEDKVDHLEEKVEEESTIEALETQQQVNVLEDTEVGGGDDDDASS
LSDISELVEERIGQLESRRISKRAEKKSRAASMKPLELAEELEKKHASTGLHWEEGAAAQ
PMRLEGVRRGSTTLGYFDLDADNAITRTISSQAFRRDHGSPQALAVHTNYIAIGMSKGVI
LVVPSKYSCYNADHMDPKMSMLGLQGDRSHAPVTSMCFNQQGDLLLAGYGDGHITVWDVQ
RSSSAKVITGEHTTPVVHTLFLGQDSQVTRQFKAVTGDSKGLVLLHAFSVVPLLNRFSIK
TQCLLDGQKTGIVLSASPVLFDEFSGGASLSSQGNNAVSSSSLGSMMGGVVGGDAGWKLF
NEGSSLAEEGVVIFVTHQTALVVRLTPTLEVYSQLSKPDGVREGSMPYTAWKCMTKSRSL
PSENVPVEASERVYLLAIAWDRKVQVAKLIKSELKVYGKWSLDSAAIGVAWLDDQILVVL
TSTGQLCLFAKDGTGIHQTSFSLDGYGGDDLVAYHTHFINIYGNPEKAFHNCIAVRGASV
YILGPMHLAVSRLLPWKERIQVLRKAGDWMGALNMSMTLYDGQAHGVIDLPRTLDAVQEA
IMPYLVELLLSYVDEVFSYISVAFCNQVEKMEPLDNPNSRSSSVHSEIKEQYTRVGGVAV
EFCVHIKRTDILFDEIFSKFVAVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSK
GWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYGALVYLFNKGLDDFRAPLEELLVVLRN
SQKESAAALGYRMLVYLKYCFSGLAFPPGQGTLPPTRLPSLRTELLQFLLEHSDAPNSKA
VSSLSSGGAYLNLYHLLQLDTEATLDVLRCAFVEDEIPKPKLSSHDSADENTKPKIENDN
GCQNILVQDTVNSLICILNRDISQTERSDSEDISGLVEEWPSKKDIGHMFEFIAYYVACE
RANVSRSVLSQILEYLTSQNNFPTSVSSHHITSTRREKQVLALLEVVPEIDWNASYVLGL
CERAQFYQVCGFIHTIRHEYLAALDSYMKDVDEPIHAFSFINKTLLQLSDNERAIFQSAV
ISRIPELVDLSREGTFLLFIGHFNKEGLHILSELRSHPRSLFLYLKTVIEVHLSGTLNFS
SLRRDDFVDPSDGIRLKDQSKGLEAYLEKISDFPKLMRNDPVEVTDDMIELYLELLCQYE
PGSVLKFLETFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSALLLTLSGLDSKFVEL
DTAVGNVVSDVALSSAADTKHLRTVLNMKEVNEISNILNACIGLCQRNTPRLNPEESETL
WFRLLDSFCEPLMDSYGDEMVSRGENHVPLLTESSVSREDEACIVNWRISKSHRGAHILR
KLFSQFIKEIVEGMIGYVRLPTIMSKLLSDNGSQEFGDFKLTILGMLGIYGFERRILDTA
KSLIEDDTFYTMSLLKKGASHAYAPRSPICCICNCLFSKNSSSFSIRVFNCGHATHLQCE
VPENEASSRGASSGCPVCMPKKKSHKARNKSILAENGLVSKFSSRPQQSPGTSILHPHES
DALENFYGLQQISRFEILTNLQKDQRLVQIEHMPQLRLAPPAVYHERVKKGTDIFTGESS
NGLAKIEKQSKSKQLRELRVKGSSLRFPLKSSIFGKEKTSKR
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaatctcagcagtacctccgaaacattacctgcggctatggaactcgacctc
gactccttccttaactcacctctcaccagcgacgacgacgacgacgacgataacaaaggc
aatcaccacaacctctactccatccctcaccgcacaatcgacgaaatcctcaacgcctcc
gattcctccacctcatctccccctacatctccaccgtccgtttactcccgcgtctccgat
cccaaacacgaccaagacgacaccgtttcagtctccacaactaaacaaccctcctcagac
ttttcctccataccggcccaacatcatgatgaaaacccctcgctccactcccgacccggt
tcgtcttcgttcagtcgggtcagacccggaatcaattacccggacgatccgtttaaaagg
ctctcgaactcgaagccgttaccgtcgcttttcggcggtgtgagatcgaatgcgaagcca
ggggcagcgcttgcggcggcagtggcagcctccagggctctcccgaccccgcacgccgcc
gcgatcaagtctaggagggctgccagtggaagcttccagaaggttcttgaagattccgat
gcggtttcggtctcagcctcagatgaattgagctctaatagtgaaattcgtaatgcgaaa
gaggatgaggttttggaaggtgtgatagggaatgagggttttgcgcaaggtcctagtgtt
aaagaggtcgaaagcgaagccgaaaatgtggttcaagtagacggattaaaggttagtagt
aatcatgaagaattgctgcgaacaagtgctgattcagtttctaattttgaaatcattgag
ccgcggattggttcttcgtccataagtgttgaggaggacgaaaacaatgtaaatgtagat
gagaatgcttctgtgcttgacaggagctctgaaattttgaactcagaagaagataaggtt
gatcatttggaagagaaggtagaggaggaatcgacaattgaggcattggaaacacagcaa
caagtgaatgttttggaagatactgaggtgggtggtggcgatgatgatgacgcgagttca
ttgagtgatatttctgaacttgtggaagagagaattgggcaattggagagcaggaggatt
agtaagagagcggagaagaaatcccgggctgcttctatgaagccattggagttagctgag
gagcttgagaagaagcatgcttctactggtttgcattgggaagaaggtgcagctgctcag
ccaatgaggcttgagggcgtacggagaggatcaaccacattaggatactttgatcttgat
gcggataatgctattacaaggaccatttcttctcaggcattcaggagagatcatggttca
cctcaagctttggctgttcatactaattatattgcaattggaatgtcaaaaggggtcatt
ctcgttgtgcccagtaaatattcctgttataatgctgaccacatggatccaaagatgtcg
atgcttggtctgcaaggggataggtctcatgcccctgtaacttccatgtgctttaatcag
caaggggacctgctcttagctggttatggtgatggtcatattactgtttgggatgtgcag
agatcatcatcagcaaaagttattactggagagcatacaacaccagtagtacatacatta
tttctggggcaggattctcaggttactcgtcaatttaaagcagttactggtgatagtaag
ggtctcgttctgttgcatgctttctcagttgttcccttgctcaataggttctccatcaaa
acacagtgtcttcttgatggacaaaaaacgggaattgtgctatcagcttcaccggtcctt
tttgatgaattctctggaggtgcttccctgtcctctcagggaaacaatgcggtttcatcc
agcagtcttggtagtatgatgggaggtgtagtaggtggagatgctggctggaaactcttt
aatgaaggctcttctttagctgaagaaggtgtggtcatatttgtcacccatcaaactgct
ctggtggtaaggcttactcctactttggaagtctattcgcagctttctaagccagatggg
gttcgagagggttctatgccttatactgcatggaaatgcatgacaaaatcacgcagtttg
cctagtgaaaacgtgcctgtggaggcatcagagagagtctacttgctcgcaattgcttgg
gaccgaaaagttcaggttgcaaagttaatcaaatcagagctaaaagtatatgggaaatgg
tctcttgacagtgcagctataggtgtggcttggttggatgatcagatactggttgttctt
acatcaactggacaactctgtctgtttgctaaggatggaactgggattcaccaaacaagt
ttttctctggatggttatggtggagatgatcttgttgcataccatacccactttattaat
atctatggaaatcctgagaaagcttttcacaattgcatagctgtaagaggagcttcagta
tacatccttggacctatgcatcttgctgtttctcgccttctcccatggaaggagcggatt
caggttctgcggaaagcaggtgactggatgggtgcactgaacatgtcaatgacactttat
gatggccaggcgcatggtgttattgaccttcctagaaccttggatgctgtacaggaggcc
ataatgccctaccttgtggagttgcttttgtcatacgtagatgaagtattttcttatatt
tcagtggcattttgcaaccaagttgagaaaatggaaccactggacaacccaaatagtaga
agcagttctgtgcactctgaaataaaagagcaatacactcgtgttggtggagttgctgtg
gaattctgtgttcatatcaagaggactgacatccttttcgatgaaattttctccaagttt
gtggcggtacaacagagagacacatttttggagcttttggaaccatatatattgaaggac
atgcttggatcactgcctcctgagattatgcaagcacttgtagaacattacagcagcaaa
ggatggttacaacgagttgaacaatgcgtccttcacatggatatctcttctttggatttc
aatcaggttgttaggttatgtagagagcatggattatatggtgctctggtgtatctcttc
aataaaggattggatgattttagggctcctttagaggagctgttggtggtcttgcgaaat
agtcaaaaggagagtgctgctgcccttgggtaccggatgcttgtttatctaaaatactgc
ttttcaggtcttgcttttcctccaggacaaggaactctgccccctacacgcttgccatct
cttagaacagaacttctgcaatttctgttagaacattctgatgcccctaactcaaaagct
gtttcaagcttatcatctggaggagcatacctgaacctgtatcatctcttacagttagat
actgaagctactttagatgttttgagatgtgcttttgtagaagatgaaatcccaaaacca
aaactttcatcacatgattcagcagatgaaaatacaaagccaaaaatagagaatgacaat
ggatgtcaaaatatattggtccaagatacagtgaactctcttatttgtattcttaatagg
gacatttcccaaacagagaggtcagatagtgaagatatcagtggattggttgaagaatgg
ccttctaagaaagacataggccatatgtttgagtttatagcatactatgttgcatgtgaa
agagctaatgtctcaagaagtgtcctgagtcagattttagaatacttgacatcacaaaat
aattttccaactagtgtttcctcacatcacataacttcaacaagaagggagaagcaggtg
cttgcccttctagaagtagtgcctgagattgactggaatgcttcttatgtattaggccta
tgtgagagagcacaattttaccaggtttgtggcttcattcatactatcagacatgagtat
cttgctgctttggatagctacatgaaggatgtagatgaacccattcatgctttctccttt
atcaacaaaacattattacagctgagtgataatgaacgtgctatttttcaatcagcggtc
atttctcgtatacctgagctggttgatttaagcagagagggaacattcttgttgttcatc
ggtcatttcaacaaagaaggtttgcatatcctgtctgaactccgctctcatccaagaagc
ctattcctttatttaaaaacggtcattgaggttcacttatctggcactctcaatttttct
tctttaagacgagatgattttgtggatccttctgatggaataaggttgaaggatcagtca
aaaggacttgaggcttacttggaaaaaatctctgatttccccaagttaatgcgtaatgat
ccagttgaagtgactgatgatatgattgagctttatctagagctattatgtcagtatgaa
cctggttcagttctcaaattccttgagacctttgatagctatcgtgtggaacactgtcta
cgcctgtgtcaggaatatgggattatagatgctgctgccttcttgttagaaagggttggt
gatgtggggagtgctcttttacttacactttcaggccttgacagtaaatttgttgagctt
gatactgctgttggaaatgtggtttctgatgtggctttgagttctgctgctgatacaaag
catctcaggactgtattaaatatgaaggaggtgaatgaaattagcaatatattgaatgcc
tgtattggattatgtcagcggaacacccctcgcttgaaccctgaggagtcagagacgctc
tggttcagattacttgactcgttttgtgaacctttgatggattcatatggtgatgaaatg
gtatctagaggagaaaatcatgttccactgctgaccgaatcatcagtctcacgtgaggat
gaagcatgcatagttaattggagaatatcaaaatcgcacagaggggctcatatcttgagg
aaattgttctctcagttcatcaaagagattgttgagggaatgataggatatgttcgcctt
ccaaccatcatgtccaaactcctctctgataatggcagccaggaatttggtgattttaaa
cttaccatactgggcatgcttggaatatatggctttgaaaggcgaattctggacactgcc
aaatccttaatagaggatgatacattctataccatgagcttactgaagaagggggcctct
catgcgtatgcaccccggagtcctatatgttgtatatgtaattgccttttctcgaagaat
tcttctagctttagcattcgtgtttttaattgtggtcacgcaacacatcttcaatgtgaa
gttccggaaaatgaggcatcaagtagaggtgcctcatctggatgcccagtttgtatgccg
aagaagaaatcacacaaagcaagaaataaatcgattcttgcagaaaatggtttagtaagt
aaattttcatccaggccacaacaatcacctggaactagtattctacacccccatgaaagt
gatgcattagagaatttctatgggcttcagcaaatttcacggtttgagatcttgactaat
ttgcaaaaggaccagagattagttcaaatagaacacatgcctcagttgaggcttgcaccg
ccagctgtttatcatgaaagggtaaagaaaggaacagatatttttacaggagaaagtagc
aatggccttgcgaaaatagagaaacaaagtaaaagcaagcaattaagggagctaagagta
aaaggatcatctcttcggttccctttaaaatcaagtatatttggcaaggagaagaccagc
aagcggtaa
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integrated database retrieval system
