Quercus lobata (valley oak): 115959184
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Entry
115959184 CDS
T07350
Name
(RefSeq) ABC transporter B family member 28 isoform X1
KO
K05657
ATP-binding cassette, subfamily B (MDR/TAP), member 10
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115959184
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
qlo02000
]
115959184
Transporters [BR:
qlo02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
115959184
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_21
AAA_5
AAA_16
AAA_29
Zeta_toxin
AAA_30
RsgA_GTPase
AAA_25
AAA_33
AAA_15
AAA_28
AAA_23
Rad17
SKA2
Motif
Other DBs
NCBI-GeneID:
115959184
NCBI-ProteinID:
XP_030933356
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All DBs
Position
9:complement(15461964..15471452)
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AA seq
719 aa
AA seq
DB search
MASATLSFSPTRTPTRVRTRATALNPKLSFTFLHQSHPFPPFPLTTTTTLLPKKKTSSIS
FAYVSAPASDPGVSEPEPRIDGSGPLTEKDRAPAPNPISWGLLWTLLSRHKLRLAISVFA
LVGCTTCTLSMPIFSGRFFEVLIGARPEPLWRLLSKVGVLYALEPILTVIFVINLNTVWE
KVMSKLRAHIFRRVLIQKVEFFDRYKVGELTGLLTSDLGSLKDVVSENISRDRGFRALSE
VTGTICILFTLSPQLAPILGLLMLTVSVSVAVYKRSTVPVFKAHGLAQALISDCVTETFS
AIRTVRSFGGEKHQMSMFGRQVLSYQATGIKLGTFKSINESLTRIAVYISLMALYCLGGS
KVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSEIEVDEALA
YGVEREMQQKELHGDNYKLFFINDYDEKILSRNMHYMSALKSASNVCSLAWSGDVCLEDV
HFSYPLRPDVEILNGLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPTRGRITVAEDD
LRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVSKDDVIKAAKAANAHEFIIS
LPQGYDTLVGERGGLLSGGQRQRVAIARALLKNAPILILDEATSALDAVSERLVQDALNH
LMKSRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAKGGQYASLVGTQRLAFE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgcaactctctccttctcccccactcgcactcccactcgcgtccgcacacgc
gcaaccgcactcaatcccaaactctcctttacttttctccaccaatcacaccctttcccg
ccattcccactcacaacaaccacaacactactgcccaagaagaagacgagctcaatttcg
tttgcttacgtgtccgcacccgcttccgacccgggtgtcagcgagcccgagcccagaatc
gacgggtcgggtccactgaccgaaaaagaccgggcaccggcgccgaatccgataagctgg
gggctattgtggactctgttgagtaggcacaagctgaggctcgcgatttcggttttcgct
ctcgttggctgcaccacttgtactctctctatgcccatattttcaggtagattctttgaa
gtacttatcggagctagaccagagccattgtggaggctgctcagtaaagtgggagttttg
tatgcactggagccaattctaaccgttatttttgttataaacttgaatactgtatgggag
aaggttatgtcaaaactgagagcccatattttcagaagggtgttgattcagaaggtcgag
ttttttgaccgatacaaggtaggtgaacttactgggttgctaacatctgatttgggttct
cttaaagatgttgtgagtgagaacatttcaagggatcgtggattcagggcactttctgag
gtcactgggacaatatgcatactatttacgttgtcccctcaacttgcacctattttgggc
cttctgatgcttactgtgtctgtttcagttgctgtgtacaagcgatcaactgtgcccgtt
tttaaagctcatgggttggcccaggcattgatatctgattgtgtgacagaaacattttct
gctattcgtactgtaagatcctttggtggtgaaaagcatcaaatgtcaatgtttggtaga
caagttctttcttatcaagctactggcataaagcttgggacttttaaatccataaatgaa
tctttgacaagaattgctgtttatatttctctaatggccttatattgtcttggaggaagc
aaagtgaaagcgggtgagctctctgttggaattgtggcttcttttattgggtatactttc
acattaacattcgctgttcaagggctcgtgaacacatttggagatcttcgtggaactttt
gctgctgttgagagaatcaactctgttttatctgagattgaagttgatgaagcccttgca
tatggtgtagaaagagaaatgcagcaaaaagaattgcatggtgacaattataaattgttc
ttcatcaacgattacgatgagaaaatcctctctaggaatatgcattatatgtcagccttg
aaatcagctagcaacgtgtgtagcttagcttggtctggtgatgtttgtcttgaagatgtg
cacttctcttatcctttgagacctgatgtggaaatcctaaatggtctaaatttaactctc
aaatgtggaaccgtaacagctctagtgggccccagtggtgcaggaaaaagtacaatagta
cagctattggcacgtttttatgagccaaccagaggtcgtattacagttgcagaagatgat
cttcgaacatttgacaagagtgaatgggcacgggttgtctctatagtgaatcaggagcct
gttcttttttcggtatctgttggagaaaatattgcatatgggcttccagatgataatgta
tccaaggatgatgtgataaaggcagccaaagcagcaaatgctcatgaattcataatttca
ctgccacagggttatgacacacttgttggcgagcgtggaggcctactgagtggaggccag
agacagagagttgctattgctagagctctgctaaagaatgccccaatcctgatacttgat
gaggctactagtgccttggatgcagtcagtgagcgtttggtccaggatgctctgaaccat
ctgatgaaaagcaggacaacattggtgattgctcaccgattaagcacagttcaaaatgcc
catcaaattgcactctgttctgatgggaggattgcagaacttggtacccacttcgaatta
ttggcaaaggggggtcaatacgcttcattggttggcactcaaaggctggcatttgagtga
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