Quercus lobata (valley oak): 115959659
Help
Entry
115959659 CDS
T07350
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115959659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115959659
Spliceosome [BR:
qlo03041
]
Common components
Common spliceosomal components
SR proteins
115959659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RNA_bind
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
115959659
NCBI-ProteinID:
XP_030934015
LinkDB
All DBs
Position
9:complement(15979313..15984935)
Genome browser
AA seq
389 aa
AA seq
DB search
MRPIFCGNFEYDARQSDLERLFGRYGKVERVDMKSGFAFIYMENERDAEDAIRRLDRTEF
GRKGRRLRVEWTKHERGIRRPGGSRKSSANTRPSKTLFVINFDTHHTRTRDLERHFEPYG
KIVSVRIRRNFAFVQYESQEDACRALDGTNMSKLLDRVISVEYAVRDDDDERRNGYSPDR
RSRDRSLERGRDRRRSPSPYRRERGSPDYGRGASPYRKERGSPDYGRGGSPSPYRRERAS
PDYGRTRSRSPYQRDRVGSDRRRGPSRSPYQPERVSADVARGPSRSPYGREKASPDNGRG
PSRSPYERERESPNNGRDLSHSPYGRERASPEDGRVPSQSPYDGRERASPDNGREVSPIP
EPRDSPNFGGGPESPMHERYRSRSPPGEE
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccatcttctgtggaaattttgagtatgacgcacggcagtctgatctggaacgg
ctttttggtagatatgggaaggttgagagggtggatatgaagtctggatttgcttttatc
tatatggaaaatgagagagatgctgaggatgctattcggagacttgatcgaacagaattt
ggtcgtaagggacgtaggcttcgtgttgaatggacaaaacatgagcgtggcattagaagg
cctggaggttccagaaaatcttcagctaatacgaggccttcaaagaccttgtttgttatt
aatttcgacacacatcatactaggactagggacttggagaggcactttgaaccatatggg
aagatagtgagtgtaaggattagaaggaactttgcatttgttcagtatgaatcacaggag
gatgcttgtagagcgttggatggaacaaacatgagcaagctgttggatcgagttatttca
gtggagtacgcagttcgggatgacgatgatgaaagaagaaacggatatagtcctgataga
agaagtcgagataggtcattggagagaggtcgtgatagaaggcgatccccaagcccctat
cgaagagagaggggcagccctgattatggccgtggtgctagtccatataggaaagagcga
ggaagccctgattatggccgtgggggcagcccaagtccctataggagagagagggctagc
cctgattatggtcggacacgcagtcgtagtccttatcaaagagatagggttgggtctgat
cgtcgccgtggtcctagccgtagtccttaccaaccagaaagggtgagtgctgatgttgct
cgtggccccagccgtagtccttatggaagagagaaggcaagccctgacaatggtcgtggc
cccagccgtagtccttatgaaagggagagggaaagccctaacaatggtcgtgacctcagc
cacagtccttatggtagagagagggctagtcctgaagatggtcgagtccccagccaaagc
ccttatgatgggagagagagagctagccctgacaatggtcgtgaagtcagccccataccc
gaacccagggacagccctaattttggtggtggtccagaaagccctatgcatgagagatat
cgcagtcgatcaccccctggagaggaatga
DBGET
integrated database retrieval system
