Quercus lobata (valley oak): 115959730
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Entry
115959730 CDS
T07350
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
qlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115959730
09124 Replication and repair
03420 Nucleotide excision repair
115959730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115959730
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115959730
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115959730
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115959730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
115959730
NCBI-ProteinID:
XP_030934117
LinkDB
All DBs
Position
9:complement(35342705..35351712)
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AA seq
323 aa
AA seq
DB search
MPSAPTKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLSFLNSILLLNQINQIVVI
ATGCNSCDYIYDSSLSTNPGIENGKLPALCSELLKKLEDFVTRDEQLNKQQSQSLPPTTT
SSLLSGSLSMALCYIQRVFRSGPLHPHPRILCVQGSSDGPEQYVAIMNSIFSAQRSMVPI
DSCYIGSNNSAFLQQASYITGGVYQKPQQLDGLFQYLSTVFATDLHSRTFLQLPKSVGVD
FRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGCGFGHHAGQYLVRPRQMLPLLPIL
RERLQNHNLTLLHADVFLIIHFW
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgctcctacaaagctctacgcagatgacgtcagcctgctagtggttctattg
gacacaaaccctttcttctggagcacttcctctctccctttctccaagttcctctctcac
gtgctttcgtttttgaactcgattctgcttctcaaccaaatcaaccaaatcgtagtgatc
gctacgggatgcaattcctgcgactacatctacgattcctctttatcgaccaaccccggc
atcgagaatggaaagctcccggctctttgctctgagttgttgaagaaattggaagacttt
gtcaccagggatgagcaattgaataagcaacagtcacagtctctaccacccaccaccaca
tcttcgctgctatcaggctccttgtccatggctctttgttatatacagagagtttttcgt
tcaggaccactccatccacatcctcgaattttatgtgtgcagggatcgtcagatgggcca
gaacaatatgttgcaatcatgaattcaatattctcagcacagcgttcaatggttcctata
gattcttgttatataggttctaacaattctgccttcctacagcaggcttcttacataact
ggtggtgtgtatcagaaaccccagcaactggatgggctctttcaatatctctcgacggtt
tttgcaactgatttgcattctcgaaccttcctacagcttcctaagtctgttggtgttgac
ttccgtgcctcgtgcttttgccataaaaagacaatagacatgggctacatatgttctgta
tgcttgtccatattctgtaagcatcacaagaaatgttcaacctgtggttgtggctttgga
catcatgcaggtcagtatttggtcaggcccagacagatgttgcctctgcttccaatctta
agagaaagactccagaatcataatcttactcttctacatgcagatgtatttttaattatt
catttttggtga
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integrated database retrieval system
