Quercus lobata (valley oak): 115959742
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Entry
115959742 CDS
T07350
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115959742
03015 mRNA surveillance pathway
115959742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115959742
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115959742
mRNA cycle factors
P-body specific factors
115959742
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
115959742
NCBI-ProteinID:
XP_030934132
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All DBs
Position
9:4820392..4829081
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AA seq
529 aa
AA seq
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MKEPSEKTKVVVRHLPPSLTHSDLSVNIDEKFSGRYNWFFFRPGKYSLKNQRYSRAYIDF
KRPEDVFEFAEFFDGHVFVNEKGAQYKVLVEYAPSQKAPKSTTKKDGREGTIYKVDPDYL
EFLKIIAKPAEHLPSAEIQLERKEAEQAGAAKEAPIVTPLMEYIRQKRAVESGVQGSSVG
GKIRRRTGAASTSKPGSSNTKRSSEKKKYILKESAKNTTQKDKSNFIVVARREDQATTSS
GKEIYDERGSVSGIPVTADSVKKKYLLLKGKDRGVSNVPEGLLQQGVTLPAGNSPSSTVP
KENQRREAGGRLIRNVLLNSDARHSQSSTAVQPHQKIQILNSESGKRPPRPVNARLGPNG
LVAKNETNSFGSEGDTKRTADDKFTKKDLQGLGNVSEKQEKRTRNRDRPDRGVWTPLRRS
DVSHTSDENLSSSMLHPTQSQCDSVEVSRGEMKDISYGSRNAEATATMSGRNNSVENGSQ
RHFGRRGAAHITKDDGSVNMSEGKSSRRGVSGHSAHEKQVWVQKPSSGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagccatcggagaagacgaaggtggtggtacggcacctccctccatcgctcacg
cactccgatctctccgtcaacatcgacgaaaaattctccggccgctacaactggttcttt
ttccgtcccggaaaatacagcctgaagaatcagaggtattctcgagcctacatagacttc
aagaggcctgaagatgttttcgagtttgcagagttttttgatggacatgtttttgttaat
gagaagggtgctcagtataaggttttagttgaatatgctccttcacagaaggccccgaag
tcaactactaagaaggatggtcgtgaagggaccatatataaagtagatcctgattatcta
gagttcctcaaaattattgcaaagccggctgagcatctacctagtgcagaaatacagttg
gaaagaaaagaagcagagcaagctggtgctgcaaaagaagctcctattgttacgccactt
atggaatatattcgtcagaaacgagccgttgagagtggagtccagggttcatcagttggt
ggcaagattaggagaagaactggggctgcatccacgagcaagcctggctcatctaatacc
aaacgaagctctgagaagaaaaagtatatattgaaggaaagtgccaagaataccactcaa
aaggacaagtcaaatttcattgtagtggctaggcgagaggatcaagcaactacttcaagt
ggaaaagaaatatatgatgagagaggttctgtttctggaatccctgtgactgctgactct
gtaaagaagaagtatctgcttctaaaagggaaagaccgaggagtatctaacgttcctgag
ggtttgttacaacagggtgtaacattgccggctggtaattctccatcttcaactgtgcca
aaagagaatcagaggcgggaggctggtgggaggttgattagaaacgtacttttaaatagt
gatgctcgtcatagtcaatcttcaacagcagttcagcctcatcagaaaattcaaatcttg
aattcagaaagtggtaagcgaccaccacggccagtcaatgcacgcttagggccgaatggt
cttgtagctaaaaatgagacaaactcctttggttctgaaggggatacaaaaaggactgca
gatgataagtttacgaaaaaggacttgcaaggtttgggtaatgtcagtgagaagcaagaa
aaacgtacaagaaacagggatagacctgatcgtggtgtttggactcctcttcgccgatct
gatgtttcacatacgagtgatgagaacttgtcatcctccatgttgcatcctactcaatca
caatgtgattcagttgaagtttcccgtggagaaatgaaagatatttcttatggaagtagg
aatgcagaggctacagccactatgagtggacgtaataattctgttgagaatggatcccaa
agacattttggccgtcgtggagctgcccacataacgaaggatgatggctctgttaatatg
agtgaggggaaatcttctagaagaggtgttagtggccatagtgctcatgagaaacaagtt
tgggtgcagaagccatcttcaggttcttag
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