Quercus lobata (valley oak): 115959752
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Entry
115959752 CDS
T07350
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115959752
Spliceosome [BR:
qlo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115959752
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_2
NRDE-2
TPR_16
TPR_7
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
115959752
NCBI-ProteinID:
XP_030934144
LinkDB
All DBs
Position
9:41315916..41334475
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AA seq
848 aa
AA seq
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MGDSETVLSETSAEMGYTSGSHTSTGYVEASSNVAPDTGASPSEATGGFAASAAPADANS
TVPGGSDSGDGNINSTEPNLVMQEAQIDTTFETKPDVGVANTSEKATGLENAATELSQSA
GNNSSVNGSVVETGYLAVENGIASENVGRVADEQQFDGFVPAMSAEEDRLWNIVRANSLD
FNAWTSLIEETEKVAQENILKIRKVYDAFLAEFPLCYGYWKKYADHEAHLGSIDKVVEVY
ERAVQGVTYSVDIWLHYCIFAIGAYQDPDTIRRLFERGLAYVGTDYLSFTLWDKYIEYEY
LQQEWGRLALIYTRILEYPNQQLDRYFNSFKELAGSRPLSELRTAEEAAAAAASAPSEAS
VQLNEGEVHPDAVEQSPKPVSAGLTEAEELQKYIAIREEMYRKAKEFDSKIIGFETAIRR
PYFHVRPLNVAELENWHAYLDFVEREGDFNKVVKLYERCLIACANYPEYWIRYILCMEAS
GSLDLSNNALARATQVFVKRQAEIHLFAARFKEQNGDIPGAQGAYQLVHTEISPGLLEAI
IRHANMEHRLGNLEDAYSLYEQAIAIEKGKEHSQTLPMLYAQYSRFVYMVSGNAEKAREI
LVQALEHVQLSKPLLEALIHFEAIQSLPKQIDYLDSLVVKFIVPDLESPNVASAADREEL
SCIFLEFLNVFGDVQSIKKAEDRHAKLFLPHRSTSELKKRHAEDYLASDKAKIAKSYSVP
SPAQSLMGAYPSAQNQWTAGYGVQPQTWPPVTQAQGQQWAPGYTQQQAAYSAYSGYGSNY
TNPQMPTSVPQTAAYGAYPTTYPAQQAFPQQSYAQPTAAVTMAPAQAQAQAQPQQPASVP
QGYYGSYY
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtgaaacagtactatctgaaacatctgcagagatgggttatacatctggg
agccacacttccacgggctatgttgaggccagctcaaatgttgctcctgacactggtgct
tccccctctgaggctactggaggttttgctgcttctgctgctccagctgatgcaaattct
actgttccaggcggatctgattcaggagatgggaatataaatagcacggaacctaatctg
gtcatgcaagaagctcaaattgatacaacatttgagactaaaccagatgttggagttgct
aatactagtgagaaagctactggtctggaaaatgcagcaacagagctttcacaatcagct
ggtaataattcttctgtgaatggaagtgttgttgaaactggatatctggcagtggagaat
ggaattgcttcagagaatgtggggagagttgctgatgagcaacagtttgatggttttgta
ccggctatgtctgctgaagaagatagactgtggaacattgtgagggctaattcattagat
tttaatgcttggacttccctgattgaagagactgagaaggtggctcaggagaacatattg
aaaatccgaaaagtttatgatgcttttttggcagaatttcctttgtgttatggttattgg
aaaaagtatgctgaccatgaggctcatctaggctctattgataaagttgtggaagtttat
gaacgggcggttcaaggagtgacctattcggtggacatttggttgcattattgcatattt
gctattggcgcatatcaagatccagacaccatccgaaggctttttgagcgaggattagct
tatgttggaacggattatctgtctttcaccctttgggataaatatattgaatacgaatac
ttgcagcaggagtggggccgccttgctttgatttacaccaggattttggagtatccaaat
caacaattggatcggtattttaacagcttcaaggagttagctggaagtcgtcctttgtct
gaattaaggactgctgaggaggctgcagcagcagcagcaagtgcaccttcggaggctagt
gtccagttaaacgagggagaggttcatcctgatgcagtggaacaatctcctaaacctgta
agtgctggcttaacagaagcagaggagttgcagaagtatatcgccattagagaagagatg
tataggaaagctaaagagttcgattctaagatcattggttttgaaacagctattaggagg
ccatactttcatgtgcggcccctcaatgttgcagagcttgaaaattggcatgcctatttg
gattttgtggaaagggaaggtgactttaacaaggtggtcaagttatatgaaagatgcctg
attgcatgtgccaattatcctgagtactggatacgctatattttatgcatggaagctagt
ggaagtttggatctctcaaataacgcgcttgctcgtgcaacccaagtctttgtcaagaga
caagctgagattcacctttttgctgctcggtttaaagagcaaaatggggatatacctggt
gcacaaggtgcctatcaacttgtacatactgaaatctcacctggacttcttgaagcaatt
attaggcatgcaaatatggaacatcggctgggaaatcttgaagatgcctactccttgtat
gagcaggcaattgccattgaaaaaggaaaagaacattcacaaacattaccgatgctgtat
gcgcaatattctcggtttgtatacatggtttctggtaatgcagagaaagctagggaaatt
cttgtccaagcccttgagcacgtgcaattgtcaaaaccacttcttgaggctttaatacat
tttgaggcaattcagtccctaccaaagcaaattgattatttagattcattggttgttaag
ttcatagttcctgacttggagagccccaatgttgctagtgcggctgatagggaagagctc
tcttgcatttttttggagtttctgaatgtctttggagatgtacaatctatcaagaaggct
gaggatcggcatgccaagcttttcttaccccataggagcacctcagaactgaaaaagcgc
catgcggaggattatctagcatcagataaagccaagatagctaagtcctattctgttcct
tcacctgcacagtccttgatgggggcatatccaagtgcacaaaaccagtggacagctggt
tatggtgtacagcctcaaacttggccaccagttacacaagcacagggacaacagtgggcc
cctggctatacacaacagcaggctgcatacagtgcatatagtggttatggaagcaattac
acaaatcctcaaatgccaacgtcagtgccacaaactgctgcttatggggcttatcctaca
acatatccagcccagcaggccttcccacagcaaagttatgcgcaacctacagcagctgtg
acaatggccccagcccaagcccaagcccaagcgcaaccccagcaacctgcttcagttcct
cagggctattatgggagttactactga
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