Quercus lobata (valley oak): 115960005
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Entry
115960005 CDS
T07350
Name
(RefSeq) serine/arginine-rich splicing factor SR34A
KO
K12890
serine/arginine-rich splicing factor 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115960005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115960005
Spliceosome [BR:
qlo03041
]
Common components
Common spliceosomal components
SR proteins
115960005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_3
RAP1
Motif
Other DBs
NCBI-GeneID:
115960005
NCBI-ProteinID:
XP_030934557
UniProt:
A0A7N2RA70
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All DBs
Position
9:complement(7250657..7257455)
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AA seq
292 aa
AA seq
DB search
MSGRFSRTIYVGNLPSDIREWEVEDLFHKYGRILDIELKIPPRPPCYCFVEFDNARDAED
AIKGRDGYNFDGCRLRVELAHGGRGPSSSDRRGSYGGGGGGGGGRSGDGGGGGGSRFGIS
RHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGVVDYTNYDDMKYAIR
KLDDTEFRNPWARAYIRVKKYEGSPPRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRS
VRRDRSVSLERSISRSVSRSRSASPVKPSRPRSRSRSRSRSGSPRQARSGSG
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcgtttttctcgcacaatctatgtaggcaacctgccctcagatataagagaa
tgggaagttgaagatctatttcacaagtatggccgtatattagacattgaattgaagatt
ccaccccgccctccatgttattgtttcgtggagtttgataatgcccgggatgcggaagat
gcgatcaagggtcgtgatggctataactttgatggttgtcgtttaagggttgaacttgcc
catggtggtaggggtccatcttcaagcgatcgtcgaggtagctatggtggtggtggtggt
ggtggtggtggtaggagtggtgatgggggagggggcggtgggagccgatttggtatctca
cgccattctgaatatcgagttgttgttcgtgggctcccttcttctgcttcctggcaagat
ttgaaggatcatatgcgaaaagctggtgatgtatgttttgctgaggtgtcccgtgatggt
gaagggacttttggtgttgtggattacacaaattatgatgacatgaaatatgctattcgg
aaactcgatgacactgaattcagaaatccttgggcaagagcttatattcgggtgaagaaa
tatgagggcagtcccccaagaagtcgtagtagaagccgaagtcgtagtcgcagtcgcagc
cgcagccgcagccgcagccgcagccgcagccgcagccgtagccgaagccgtagcagaagt
gtaagaagggaccggagtgtatcattggagcggtctatttctaggtcagtatcaagatcc
agatctgcatctcctgtcaaaccttccaggccaagatcaagatcaagatcaagatctagg
tcaggatctccccgccaggcacggtctggtagtggctga
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