Quercus lobata (valley oak): 115960240
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Entry
115960240 CDS
T07350
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115960240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115960240
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115960240
U7-dependent histone pre-mRNA processing factors
115960240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
115960240
NCBI-ProteinID:
XP_030934894
UniProt:
A0A7N2MHC0
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Position
9:complement(13779561..13791311)
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AA seq
741 aa
AA seq
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MGTSVQVSPLCGVYNENPLSYLVSIDSFNFLIDCGWNDHFDPTLLQPLSKVASTIDAVLV
SHPDTLHLGALPYAMKQLGLNAPVYATEPVYRLGLLTMYEQFLSRKQISEFDLFTLDDID
SAFQAMTRLTYSQNHHLTGKGEGIVIAPHVAGHLLGGTMWKITKDGEDVIYAVDLNHRKE
RHLNGTVLASFVRPAVLITDAYNALNNQPYRRVEKENEFGETIKKTLGAGGNVLLPVDTV
GRVLELILTLEQYWTDKSLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEQNRENPF
LLKHVRFCISKSELDNAPDGPKVVLASMASLEVGFSHDIFVEWATDAKNLVLFTERGQFA
SLARILQADPPPKAVKVTMSKRVPLVGDELIAYEEEQNRIKKEEALKATLIKEEESKASQ
SADINASDPMVIDVSKTLASPDVAGQHSAGYRDILIDGFVPPSTSVAPMFPFYENTFDWD
DFGEVINPDDYVIKDEDMDQTGMHVGGNLDGKFDEGSANMILDTKPSKVVSNELTVHVKC
SLIYMDFEGRSDGRSIKSILSQVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPHIEE
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTDSGMLSLLPCSNAAPLH
KSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTIRKVGDASQKGGGSGLQQILIE
GPLCEDYYNIRDYLYSQFFLL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggaacttcagtgcaggtgagtccactatgtggagtgtacaacgagaacccactctca
tacttagtctccatcgacagcttcaacttcctcatcgactgtggctggaacgaccacttc
gaccccactctcctccaacctctctccaaggtagcgtcgacgatagacgcggtattggtg
tcgcatccagacacgcttcacctcggcgcgcttccttatgccatgaagcagctcggactc
aacgctccggtttacgccaccgagccggtttacagattaggtcttctcactatgtacgag
cagtttctctcgagaaagcaaatatcagagtttgatctgtttactttagatgatattgat
tctgctttccaagctatgaccagactaacctattctcagaaccatcatctcactggcaaa
ggggagggaattgtgattgctcctcatgtggctgggcatcttttgggaggtactatgtgg
aagataacaaaggatggtgaggatgtcatatatgctgttgacttaaaccatcgcaaagaa
aggcatttgaatggaactgttctagcatcttttgtgcggcctgctgttctaattacagat
gcttataacgctctgaataatcagccttatagacgtgttgaaaaggagaatgaatttgga
gaaaccataaagaaaactctaggtgctggtggaaatgtattactacctgtggacacagtt
gggcgagtattggagcttattttaacattagaacagtattggacagataaaagcttgaac
tatcccatcttctttcttacatacgtcgcatctagcacgattgattatgttaagagtttc
cttgagtggatgagtgattccattgcaaagtcttttgaacagaatcgtgaaaatcccttt
cttcttaaacatgtcagattttgtattagcaagagtgaacttgataatgctccagatggt
ccaaaggttgttctagcatccatggcgagtttggaagtgggtttttcacatgatatattt
gtcgaatgggcaacagatgccaagaatcttgtcctcttcactgaaagaggccagtttgct
tcattagctcgtatactccaggcagatccacctccaaaagctgttaaagtcaccatgtcc
aagagggttcctttggttggagatgagctaattgcttatgaagaagagcaaaaccgaata
aaaaaggaagaagctttaaaagctactctcatcaaagaggaggaatcaaaggcatctcaa
agtgctgatattaatgcgagcgatccaatggttatcgatgttagcaaaacacttgcttca
ccagatgtggctggtcaacacagtgctgggtaccgggacatattaatcgacggatttgtt
cctccatccaccagtgttgccccaatgtttcccttttacgaaaatacttttgactgggat
gattttggggaagttataaatcctgatgattatgtaatcaaggatgaagacatggaccaa
acaggaatgcatgttggtggcaatttagatggaaaatttgatgaaggctctgccaatatg
atccttgacacaaaaccttcaaaagtcgtgtctaatgaattaacagtgcacgtgaagtgt
tcgttgatttatatggactttgagggccgttctgatggccgatctattaaatcaattctc
tcccaagtggctcccctgaagcttgttctggtgcatggatcagccgaggccacagagcat
ttgaagcaacactgcttgaagcatgtttgtccgcacgtttatgctcctcatattgaggaa
acgattgatgtcacctctgatttgtgcgcttataaggtacaactttcagagaagctgatg
agtaatgtgctctttaagaagcttggagattatgagatagcctgggttgatgctgaagta
gggaagacagacagtggcatgctgtctctacttccctgttcaaatgcagctccattgcat
aaatctgttcttgttggtgatcttaaaatggcagatttcaagcagtttctcgccagtaag
ggcgtccaggttgaatttgctggtggggctttgcgatgtggggagtatgtgacaatacgc
aaggttggggatgcaagccagaaaggtggtggttctggtcttcagcaaattctaatcgaa
ggccccttatgtgaagattattataacatccgggattatttatattcacagttctttttg
ctttaa
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