Quercus lobata (valley oak): 115962168
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Entry
115962168 CDS
T07350
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115962168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115962168
04121 Ubiquitin system [BR:
qlo04121
]
115962168
03036 Chromosome and associated proteins [BR:
qlo03036
]
115962168
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115962168
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115962168
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115962168
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115962168
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115962168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_6
PHD_NSD
zf-C3HC4_2
zf-C3HC4
zf-RING_5
PTCB-BRCT
zf-C3HC4_3
zf-RING_2
zf-RING_10
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
115962168
NCBI-ProteinID:
XP_030936914
UniProt:
A0A7N2RB46
LinkDB
All DBs
Position
9:40903729..40910765
Genome browser
AA seq
723 aa
AA seq
DB search
MEDSMNMKSDSSSSCSKTLLINPWLFHYHKLALELKCPLCLNLLHKPMLLPCNHIFCNSC
IPISAQVGSDCSVCKAHYFNKDLRTAPFIENLVTIFRGLEATYCSNLFQPVSSDSGRVLE
QGQASLYTGKFSKESVEGVKSSSGQSVFSLTANKRVQVPLNLNCSVEDGVDKNDKFENHN
SPVVGKGGREGDKFNGAVNMNPPSDSLPMRPGNHEECRVVEIEMNQGAQSLPDSPLSFSD
AKGSDDDSCDRGSEHSPENSLSKGAINKNSEDRKRLLRSGNETEDGHSRDIKRQKKLNYG
SSEFIPAVVSHSEISAAPNSELELESRVPPVAPQQAVSNKSICAFCQSSKVSETSGPMLH
YANGKKVVGDEATRSNVIHVHTICIDWAPQVYYDDNENVKNLKAEVARGAKLKCSRCGKK
GAALGCYMKSCRKSYHVPCAAEIANCRWDNENFLMLCPAHSSVRFPNEKPKSGKQVLKDH
PEPIQKATQQSNGWEAPSDGAKEWVLCGSALSTEERIHLVKFASMCGATVTKFWKPNVTH
VIAATDAQGACTRTLKVLMAILNGRWILKIDWIKACMEAMHPVNEEPYEVGLDNHGCCDG
PKTGRLLALNNAPKLFNGLKFYFTGGFVPEYEEDLCDLVMTAGGTVLKSKEELVPQSCDG
QAKILVVYNLDPPQGSKVGEEVDILWKRLTEAQDVAANIGSQVIGHTWLLESIAACELQP
LFS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggaggattctatgaatatgaagagtgatagtagtagtagttgtagtaaaacacttctc
atcaacccatggcttttccattaccacaaactcgctctcgagctcaaatgccctctctgc
ttaaacttgcttcacaaaccaatgttactcccatgcaatcacattttctgcaattcctgt
atacccatttcagcacaggttggatcagactgctctgtctgtaaagctcattatttcaac
aaagatttaaggactgcacctttcatagaaaatttggttacaatcttcaggggattggaa
gctacttactgttccaatctttttcagcctgtttcatctgattctgggagggttttggag
caaggccaggcttcactttatactggtaaatttagtaaggagagtgttgaaggggttaaa
tcaagcagtgggcagtctgtcttttcattaacggctaataagcgagttcaggttccgttg
aatttgaattgttctgttgaagatggggttgacaagaatgataaatttgagaaccacaat
tcaccagtagttggtaaaggtggcagggaaggagacaaatttaatggtgccgtgaatatg
aatccaccatcagacagtctaccaatgagacctgggaaccacgaagagtgcagagtcgtg
gaaatagaaatgaatcagggggcacagtcactaccagatagccctctatcgtttagtgat
gccaagggttcggatgacgacagctgtgatcggggcagtgagcatagtccagaaaattct
ttgagcaagggagccatcaacaaaaattctgaagataggaagaggctattgcgatctggc
aatgaaactgaagatggtcattcgagggacatcaagaggcaaaagaaattaaactatggc
tcatcagagttcattcctgcagttgtttcacattctgaaatctcagcggctcccaattct
gaattggagcttgagtctagggtgcctcctgttgctccgcagcaggctgtgtcaaataaa
agcatttgtgcattttgccagtcttccaaagtctcagagactagtggcccaatgttgcat
tatgctaatgggaaaaaggtagtgggagatgaggcaacccgttcaaatgtcatacatgtt
cacacaatatgcattgattgggcacctcaagtatattatgacgataatgaaaatgttaag
aatttgaaggcagaagtggcaaggggtgctaagctcaagtgcagcaggtgtggaaagaag
ggagcagccctgggttgctatatgaaatcctgtcgaaaaagctatcatgttccttgtgca
gcagaaatagcaaattgtcgttgggataatgaaaactttctcatgctctgtccagctcat
tcttctgtcaggtttccaaatgagaagcccaagtctggaaaacaagtcttaaaggatcat
cctgagccaattcagaaagcaactcagcagtccaacggttgggaagctccatcagatgga
gctaaagaatgggttttatgtggatctgctctatccacagaagagaggattcatctggtc
aagtttgcgagcatgtgtggtgcaactgtgaccaagttctggaaaccgaatgtaacacat
gtgattgcagccacagatgcacagggtgcgtgcaccaggacactgaaagttctaatggcc
attttgaatgggagatggattcttaaaattgactggataaaagcatgcatggaagccatg
catcctgtgaatgaagaaccttatgaagttggtcttgacaaccatggttgttgtgatggc
cccaaaactggcaggcttttggctttaaacaatgcgccaaagctctttaatgggttgaag
ttctatttcactggtggctttgtgcctgaatacgaggaagacctctgtgatttggttatg
acagcaggaggtactgttttgaaaagtaaagaagaattggttccacaaagctgtgatggc
caggcaaagatactagttgtttacaaccttgatcccccacaaggatccaaggtaggagaa
gaagttgatattctttggaaaagattaactgaggcacaggatgtagctgccaatattgga
tcccaagtcattggtcacacatggcttttggaatcaattgctgcatgcgagttgcagcct
cttttcagctga
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integrated database retrieval system
