Quercus lobata (valley oak): 115962853
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Entry
115962853 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115962853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115962853
03012 Translation factors [BR:
qlo03012
]
115962853
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115962853
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115962853
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115962853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
AAA_16
AAA_19
nSTAND3
NPHP3_N
NACHT
ATPase
Dicer_dimer
OTCace_N
Myosin_head
Motif
Other DBs
NCBI-GeneID:
115962853
NCBI-ProteinID:
XP_030937586
LinkDB
All DBs
Position
10:complement(27149685..27174973)
Genome browser
AA seq
1195 aa
AA seq
DB search
MPYSAIFHGYIRTTTVPFLAISLRPTSYFRAPNTLKPSLLPFFSRNRHPRFGNSHVRPYS
RHRVTCSGLEVVRNGRQRRVATSFWYQQSSGYGRYAYQDVSSDESDRDSGSTQQQLQCAS
TLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQLSAMAARMGLHSHQYAKVVVFSK
VPLPNYRSDLDEKRPQREVILPLGLQREVDARLRLFLSQKPMSNGSFSDNSLSRSGSDEG
FYEQQEPLIKNSVVMERILQRRSLQLRDKQQDWQETPEGQKMLEFRRSLPAFKEKDALLK
AVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMSVSERVAA
ERGEKLGDSVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRHLKGVTHVIVDEIHERGM
NEDFLLIVLKELLHRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLENI
LEMTGYRLTSYNQIDDYGQEKVWKMQKQAQTLKKRKSQIASAVEDAVEAADFKEYSLRTQ
ESLSCWNPDSIGFNLIEYVLCHIVKKERSGAVLVFMTGWDDINSLKDQLQSHPLLGDPSK
VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYD
ALNNTPCLLPSWISKAAARQRRGRAGRVQSGECYHLYPRCVYDAFADYQLPELLRTPLQS
LCLQIKSLQLGSISEFLSRALQAPEPLSVQNAVEYLKIIGALDENENLTLLGRNLSTLPV
EPKLGKMLIFGAIFNCLDPIMTVVAGLSARDPFLMPFDKKDLAESAKAQFAARNYSDHLA
VVRAYEGWKDAERTQSGYEYCWRNFLSAQTLKAIDSLRKQFFFLLKDTGLVDQNPENCNR
WSHDEHLIRAIICAGLFPGICSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLV
FNEKVKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMKPALADTFIS
LRREVEELIRKKLLDPKHDMQLYNDKLLSTVRLLVSEDQCDGRFVYGRHLPAPSKKATKD
MLPGALSKGGVEGNNLKNQLQTLLARAGHEAPTYKTKELKNNQFRSTVIFNGLNFVGKPC
TSKKLAEKDAAGEALLWLSGESPSVSTDIDHMSMLLKKSKKKDQRRTSIRGAKWG
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcagccattttccatggctatatcagaaccaccacagtcccttttctcgcc
atatctctcagacccacctcttattttcgagcccccaatactctaaaaccctcactgcta
cctttcttttcaagaaatagacacccgaggtttgggaactcgcacgtgcggccctactcg
aggcatcgggtcacttgctcgggcctcgaggtggtccgcaatgggaggcagaggagagtt
gctacgtcgttttggtaccagcagagctccgggtacggccggtacgcgtaccaggacgtg
tccagtgacgagtcggaccgtgactcggggtcgactcagcagcaattgcagtgtgcttca
accctagataacattgatgagtggagatggaaattaaccatgcttcttcgcaacaaagat
gagcaagaagtggtgtcgagggagagaaaagatagacgtgattttgagcaactttcagca
atggcagccaggatgggcttacatagccatcaatatgcaaaagttgtcgtctttagtaaa
gtccctttgcccaactacagatctgacctggatgagaagcgtccacagagagaggtgatc
ttacctttgggattgcaaagagaagtagatgctcgactcagactttttctctctcaaaaa
cctatgagcaatggaagtttctcagataattccttgtcaagatcaggaagtgatgagggg
ttttacgagcagcaggagcccttgataaagaatagtgttgtcatggagagaatcctccaa
cggagaagtttgcaattgcgagataagcaacaagattggcaggaaactcctgagggtcaa
aagatgcttgaatttcgtagaagtctccctgcattcaaagagaaggatgcattattaaaa
gctgtttctgaaaatcaggtcattgttgtctcaggtgaaactggctgtggtaaaaccacg
caacttcctcaatacattttggaatctgagattgaagcagctcgtggagctgtctgtagt
attatatgtactcagcctagaagaatatctgccatgtctgtttctgaaagagttgctgca
gaaagaggggagaaactgggagattctgttggttataaagttaggctagagggaatgaaa
gggagggacactcgtcttcttttttgcaccactggcatattgttgaggagattacttgtt
gatagacatttgaaaggggtaactcatgttatagttgacgagattcatgaacgtggaatg
aatgaagattttcttcttattgtcctcaaagagctccttcaccgaagaccagaattgagg
ttgattttgatgagtgcaaccttaaatgctgagcttttctcttcctacttcggtggtgct
ccaatgattcatattcctgggtttacatacccagtccgctcacattttctggagaatatt
ctggaaatgactggatatcgattgacttcatataatcaaattgatgattatggtcaagaa
aaggtgtggaaaatgcagaaacaagctcaaactctaaaaaagaggaagagccagattgct
tctgctgttgaggatgcagttgaagctgccgactttaaggagtatagcctacggactcag
gagtctttatcctgttggaatcctgactcaattggttttaacctcattgaatatgtgctc
tgccacatagtcaagaaggaaaggtctggtgctgttttggtttttatgactggttgggat
gacataaattctttgaaggaccagctccaatctcatcccctcttgggcgacccaagcaag
gtgctgcttcttgcatgccatggttccatggccagctctgagcagagattaatatttgat
aagcctgaagatggagtgaggaaaatagttctagctacaaacatggctgagactagtatc
accatcaatgatgttgtttttgtggttgattgtggaaaggcaaaagagacatcatatgat
gcactaaataataccccttgtttgctaccatcctggatatcaaaggctgctgctcggcaa
aggagaggaagagctggtcgggttcaatctggcgagtgttatcatctctatcccagatgt
gtatatgatgcttttgctgattatcaattgccagaacttttaaggacaccattacaatcg
ttatgtttacaaatcaaaagtttacaacttggaagtatttcagaattcttatctagggca
ttgcaggcaccagaacctctatcggttcaaaatgctgtagaatacttgaagatcattggg
gctttggatgagaatgaaaatctgactctgctaggacgcaacttgtcaacgcttccagtt
gagccaaaacttggaaagatgctcatatttggggctattttcaactgcttagatccaata
atgactgttgttgctggtcttagtgccagagatccattcttgatgccatttgacaagaag
gatcttgcagagtctgcaaaagcacagtttgctgcccgtaattacagtgaccaccttgcc
gttgtccgagcttatgagggttggaaagatgctgaaagaacacaatccggttatgagtac
tgttggagaaatttcctttctgctcaaactctgaaagccattgactctcttcggaagcag
ttcttctttttgctgaaggacactggtctagttgatcaaaacccagaaaactgcaataga
tggagccatgacgagcatcttatccgagctatcatctgtgcaggcttgttccctggaata
tgctctgttgtgaacaaagagaagtcaatagcactgaaaacaatggaggatggtcaagta
cttctgtactcgaattctgtgaatgctggggtacccaaaattccatatccatggttagtt
ttcaatgaaaaggtgaaagtaaattcggtatttctccgtgattcaactggtgtctccgat
tcagtgctgctcttatttggagggaacatttccaggggtggactagatgggcacctaaaa
atgttgggaggatacctggaatttttcatgaaacctgctttagcagatacgttcataagc
ttaaggagagaagttgaggaactaatacggaagaaactcttggatcccaagcatgatatg
caattatacaatgacaagctcctttcaactgtaagattgctagtctcagaggaccaatgt
gatggtagatttgtctatggtcggcacctgccagcaccttcaaagaaggcaacaaaagat
atgctaccaggtgcactctcgaaaggtggagttgagggtaataatttgaagaatcagcta
cagactttgcttgcccgggcaggacatgaagcacccacatacaagacaaaagaactgaaa
aataaccagttccgttccactgtgatctttaatgggttgaattttgtggggaaaccttgc
actagtaagaaacttgcagagaaggatgccgctggtgaggctctactgtggttgagtggt
gagagcccttcagtttctacagatattgaccacatgtctatgcttctaaagaagagcaaa
aagaaagatcagagaagaacctcaattcgtggtgctaagtggggttaa
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