Quercus lobata (valley oak): 115962981
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Entry
115962981 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115962981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115962981
03009 Ribosome biogenesis [BR:
qlo03009
]
115962981
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115962981
Spliceosome [BR:
qlo03041
]
Complex A
U1 snRNP components
U1 related factors
115962981
Complex B
115962981
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
Helicases
115962981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
115962981
NCBI-ProteinID:
XP_030937725
LinkDB
All DBs
Position
10:complement(7247422..7252470)
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AA seq
661 aa
AA seq
DB search
MSLYDHRYGDPNSYRERRSDLIGPPAPVAPPVIGVAASSYGRGGPVPYGGAAPPQVYGRG
GGGGGGSGGSGSFNGYPPFQPSAGRFDVGRGGSGGRIGNGNVGDRRIGNVGRGGVGGGRG
FDSGSGGGRGGISRGGGDRDGRIGGRGYGGGRGGSSSFGGGGRGFDGRGGGRGGRHGGGS
RGDLDNIALPKQDFGSLVPFEKNFYVETPSVRAMSEHEAVVYRVRRDITVEGHDVPKPIR
MFHEANFPDYCLDAIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALV
HVKAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRANIRITCIYGGAPKGPQIRDL
KRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ
TLYWSATWPREVETLARQFLRNPYKVIVGSSDLKANQSIIQVVEILTDMEKYNRLIKLLK
DMMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMT
ATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANAKYARDL
IKILQEAGQVVNPALSSMARSAGSGLGGSGGNFRSRGRGGFGNRSQISGSNTIPLGGRRP
W
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatacgaccaccgctacggcgatccgaattcctatcgcgagcgtcgaagtgat
ttaattggtcctccagcaccggtggctccgccagttattggcgttgccgcttcgagctat
ggccgtggtggacctgtgccatacggaggcgctgctcctcctcaggtttatggcagagga
ggaggaggaggaggaggaagtggtgggtcgggtagttttaatgggtacccgccttttcag
ccgtctgctggccgatttgatgttggccgaggcggcagtggtggtagaattgggaatgga
aatgttggggatagaagaattggtaatgtagggcgtggtggtgttggtggggggagaggg
tttgattcggggagtggtggtggtagaggtggtataagtcgcggtggaggagatagggat
ggccgaattgggggtaggggttatggtggtggtcgtggtgggagtagtagttttggtggt
ggcgggaggggattcgatgggcgtggtggtggaagaggaggtaggcatggtggggggtca
agaggggacttggacaacattgctttgcctaagcaggattttgggagtttggtccctttt
gagaagaatttttatgttgagactccttccgtgcgggcaatgagtgagcatgaagctgtg
gtttatagggtgaggcgggatatcacggtggaagggcatgatgttccaaagccaattagg
atgtttcacgaagctaatttccccgattactgccttgatgcgattgcaaaactgggtttt
gttgagccaacaccaattcaggctcaaggatggccgatggctcttaagggtagggattta
attggaattgctgagactggttctggtaagactttggcatatctgcttccagctttggtc
catgtcaaagcgcagcctcgattggtacaaggtgaaggtcccattgtattggtattagca
cctactagagaattagctgtccaaattcaagaagaagctctaaaatttgggtcacgtgct
aatattagaattacttgcatatatggtggtgctcctaaagggcctcaaattcgcgacctt
aaaagaggtgtggagattgttattgctacacctggccgactgatagatatgttggaagct
caacacacaaacttgcgaagagtgacctatcttgtgttagatgaggctgatcgaatgttg
gacatgggatttgagcctcagataaggaaaatcgtatcccagattcggccagatagacag
acattgtattggagtgccacatggccaagggaggttgaaactctagcaaggcagttttta
cgcaatccatataaggttattgttggatcatcagatctgaaagcaaaccagtctataatt
caagttgttgaaattttgacagatatggagaaatataataggctgattaaactccttaaa
gatatgatggatgggagccgaattctgatatttatggagacaaaaaaaggatgtgaccaa
gttacaaggcaattgagaatggatggatggccagctttatccatccatggtgataaaaac
caggccgaaagggactgggtccttgctgagtttaaaagtggcagaagtcctataatgact
gccactgatgttgctgcacggggtcttgatgtgaaggacatcaaatgtgtggtcaattat
gattttccgtcaagccttgaagattatgtccacaggattggccgaactggtcgggcagga
gcaaaggggactgcgttcacctttttcacccatgcaaatgcaaagtatgctagggatctt
atcaagatcttgcaagaagctgggcaggttgtgaatcctgcactctctagcatggctcgt
tcagctggttctggtctaggaggatctgggggaaactttcgctccagaggacgaggaggg
tttggcaatcggtctcagatttcaggctctaatactattccccttggtggaaggagacct
tggtag
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