KEGG   Quercus lobata (valley oak): 115963058
Entry
115963058         CDS       T07350                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03018  RNA degradation
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115963058
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115963058
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115963058
   03041 Spliceosome [BR:qlo03041]
    115963058
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115963058
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115963058
Spliceosome [BR:qlo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    115963058
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 115963058
NCBI-ProteinID: XP_030937807
LinkDB
Position
10:35684483..35689615
AA seq 98 aa
MSGGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDAHLDLSKLRAQPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcaggtggccctggacttgaatctcttgtagatcaaacaatatcggttatcacaaat
gatggacggaacatagtgggagtcttaaaaggctttgaccaggctacaaatattatcctt
gatgaatctcatgagcgtgtctactccacaaaggaaggtgttcaacagcttgtgttgggt
ttgtacataatcaggggtgacaacataagcgtagttggggagctcgatgaggagcttgat
gctcatcttgatttgtcaaaactgagggctcaacctctcaagcctgttatccattaa

DBGET integrated database retrieval system