Quercus lobata (valley oak): 115963058
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Entry
115963058 CDS
T07350
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115963058
09123 Folding, sorting and degradation
03018 RNA degradation
115963058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115963058
03041 Spliceosome [BR:
qlo03041
]
115963058
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115963058
mRNA degradation factors
5'-3' decay
Lsm complex
115963058
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115963058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
115963058
NCBI-ProteinID:
XP_030937807
LinkDB
All DBs
Position
10:35684483..35689615
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AA seq
98 aa
AA seq
DB search
MSGGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDAHLDLSKLRAQPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggccctggacttgaatctcttgtagatcaaacaatatcggttatcacaaat
gatggacggaacatagtgggagtcttaaaaggctttgaccaggctacaaatattatcctt
gatgaatctcatgagcgtgtctactccacaaaggaaggtgttcaacagcttgtgttgggt
ttgtacataatcaggggtgacaacataagcgtagttggggagctcgatgaggagcttgat
gctcatcttgatttgtcaaaactgagggctcaacctctcaagcctgttatccattaa
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